Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.3e-102 375.6 185 100.0
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.9e-88 329.3 185 89.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.9e-88 329.3 185 89.7
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.9e-88 329.3 185 89.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 2.7e-87 325.5 185 88.6
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 3.5e-87 325.1 185 89.2
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.6e-87 324.7 185 88.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-86 323.6 185 88.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-86 323.6 185 88.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.3e-86 323.2 185 88.1
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.7e-86 322.8 185 87.6
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.7e-86 322.8 185 88.1
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 5.1e-86 321.2 188 87.2
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 8.6e-86 320.5 185 86.5
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 3.6e-84 315.1 185 85.4
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 3.6e-84 315.1 183 85.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 8.1e-84 313.9 185 84.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 6.9e-83 310.8 185 84.3
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.7e-81 306.2 185 84.3
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.9e-81 305.4 187 82.4
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.7e-79 298.9 185 81.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 5.8e-74 281.2 184 75.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.3e-73 280.0 185 74.1
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.7e-73 279.6 185 74.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.7e-73 279.6 184 73.9
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.9e-73 278.9 184 74.5
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 3.8e-73 278.5 184 74.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.9e-73 278.1 185 74.1
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 8.4e-73 277.3 185 74.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.1e-72 276.9 185 75.1
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.1e-72 276.9 185 75.1
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.4e-72 276.6 185 75.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.4e-72 276.6 185 75.1
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.4e-72 275.8 184 73.4
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.4e-72 275.8 185 74.6
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.4e-72 275.8 185 74.6
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.2e-72 275.4 185 73.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 7.1e-72 274.2 184 73.9
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.3e-72 273.9 185 73.5
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 9.3e-72 273.9 185 73.5
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-71 273.1 185 73.0
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-71 273.1 185 73.0
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.6e-71 273.1 185 72.4
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.6e-71 273.1 185 71.9
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.1e-71 272.7 184 72.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.1e-71 272.7 183 73.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.1e-71 272.7 185 73.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.1e-71 272.7 184 73.9
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.1e-71 272.7 184 73.9
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.7e-71 272.3 193 71.5
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.6e-71 271.6 184 72.3
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 4.6e-71 271.6 184 72.3
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.6e-71 271.6 184 72.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 4.6e-71 271.6 183 72.7
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.0e-71 271.2 184 73.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.9e-71 270.8 184 72.3
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 7.9e-71 270.8 184 72.8
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.0e-70 270.4 185 70.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.3e-70 270.0 183 72.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.3e-70 270.0 183 73.2
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.8e-70 269.6 185 70.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.8e-70 269.6 185 71.4
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.3e-70 269.2 183 73.2
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.3e-70 269.2 185 70.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.3e-70 269.2 185 71.9
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.0e-70 268.9 185 70.3
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.0e-70 268.9 183 71.6
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 3.9e-70 268.5 185 70.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 3.9e-70 268.5 184 72.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 5.1e-70 268.1 183 70.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 5.1e-70 268.1 186 73.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 5.1e-70 268.1 196 69.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 6.7e-70 267.7 180 72.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 6.7e-70 267.7 184 72.3
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 6.7e-70 267.7 183 72.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.1e-69 266.9 185 70.8
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.9e-69 266.2 185 72.4
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.9e-69 266.2 184 71.7
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.3e-69 265.4 181 71.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.6e-69 264.6 184 71.2
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 5.6e-69 264.6 175 76.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 7.4e-69 264.2 184 70.1
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 9.6e-69 263.8 183 69.9
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-68 263.5 175 76.6
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-68 263.5 175 76.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.1e-68 262.7 183 73.2
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.2e-68 261.2 183 72.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 8.1e-68 260.8 183 72.1
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.1e-67 258.8 174 73.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.9e-67 257.7 174 73.6
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 9.0e-67 257.3 204 65.2
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 9.9e-66 253.8 202 65.8
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.4e-64 250.0 182 68.1
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.3e-62 243.4 165 74.5
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.3e-62 242.7 183 65.6
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.0e-62 242.3 183 66.1
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.9e-62 241.9 178 66.9
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 4.3e-61 238.4 176 68.2
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.6e-60 236.5 174 67.2
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.4e-58 228.8 258 50.4
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.7e-57 226.5 176 63.1
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.2e-56 222.2 159 72.3
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.1e-56 221.1 173 64.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 7.9e-55 217.6 147 73.5
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-53 213.4 185 59.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 7.4e-53 211.1 183 61.2
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 7.4e-53 211.1 189 59.3
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 9.0e-51 204.1 184 59.8
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.3e-49 200.3 178 57.3
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.3e-44 183.7 184 54.9
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 6.9e-43 177.9 88 97.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.9e-41 172.6 140 65.0
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 6.5e-41 171.4 174 48.3
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.7e-39 166.0 119 72.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 4.6e-39 165.2 182 52.2
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.7e-36 156.8 121 67.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 4.8e-36 155.2 184 46.7
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-35 154.1 116 69.0
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.9e-34 148.3 118 63.6
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.2e-33 146.4 105 70.5
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.9e-32 143.3 88 76.1
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 3.0e-30 136.0 92 70.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.9e-30 135.6 127 55.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 5.2e-30 135.2 179 41.9
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.4e-27 127.1 83 71.1
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.6e-26 123.6 88 68.2
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.2e-21 107.5 102 59.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.2e-20 103.2 189 31.7
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 6.5e-17 91.7 97 57.7
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.8e-14 81.6 61 57.4
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.5e-10 69.3 30 100.0
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.0e-09 65.5 30 93.3
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.5e-08 63.9 87 42.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 2.5e-08 63.2 35 77.1
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 2.1e-07 60.1 52 57.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.0e-06 57.8 132 36.4


User provided reference genes

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