Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 9.5e-77 290.0 141 100.0
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-50 203.4 100 99.0
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-50 203.4 100 99.0
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-50 203.4 100 99.0
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.5e-50 203.0 100 99.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 4.5e-50 201.4 100 98.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.3e-49 199.9 100 97.0
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.3e-49 199.9 100 97.0
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.3e-49 199.9 100 97.0
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.7e-49 199.5 100 97.0
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.7e-49 199.5 100 97.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.1e-48 196.8 100 95.0
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 4.2e-48 194.9 100 95.0
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.6e-47 193.0 100 93.0
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 2.7e-47 192.2 100 93.0
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.7e-47 192.2 100 93.0
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.3e-46 189.9 98 92.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.5e-45 185.7 100 89.0
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.8e-44 182.2 100 87.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 8.1e-44 180.6 100 88.0
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-43 178.7 88 97.7
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 6.9e-43 177.6 100 84.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 3.8e-41 171.8 99 80.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.8e-41 171.8 99 80.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 8.4e-41 170.6 99 79.8
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.1e-40 170.2 99 80.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.1e-40 170.2 115 72.2
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.1e-40 170.2 99 79.8
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.1e-40 170.2 115 71.3
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.1e-40 170.2 99 79.8
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.1e-40 170.2 115 72.2
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.9e-40 169.5 98 80.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 4.2e-40 168.3 99 79.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.5e-40 167.9 99 77.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 5.5e-40 167.9 99 77.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 7.1e-40 167.5 115 71.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 7.1e-40 167.5 98 79.6
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 7.1e-40 167.5 100 78.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.1e-40 167.5 100 78.0
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.1e-40 167.5 100 78.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 9.3e-40 167.2 100 78.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 9.3e-40 167.2 100 78.0
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 9.3e-40 167.2 98 78.6
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.2e-39 166.8 100 78.0
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.6e-39 166.4 99 76.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.6e-39 166.4 99 78.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.6e-39 166.4 99 78.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.1e-39 166.0 116 69.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.1e-39 166.0 116 69.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.1e-39 166.0 100 77.0
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.7e-39 165.6 99 78.8
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.6e-39 164.9 100 77.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 4.6e-39 164.9 100 78.0
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 6.0e-39 164.5 100 77.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 7.9e-39 164.1 112 71.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 7.9e-39 164.1 116 68.1
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 7.9e-39 164.1 124 66.1
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.0e-38 163.7 100 76.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.3e-38 163.3 99 75.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 1.8e-38 162.9 98 77.6
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.8e-38 162.9 99 75.8
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.3e-38 162.5 100 78.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.3e-38 162.5 103 72.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.3e-38 162.5 116 68.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.0e-38 162.2 100 77.0
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.0e-38 162.2 115 71.3
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 3.0e-38 162.2 96 77.1
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.9e-38 161.8 91 82.4
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 5.1e-38 161.4 100 78.0
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 5.1e-38 161.4 104 74.0
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 5.1e-38 161.4 115 68.7
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 5.1e-38 161.4 100 74.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 5.1e-38 161.4 100 76.0
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.7e-38 161.0 115 70.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 6.7e-38 161.0 115 70.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.7e-38 161.0 114 71.1
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 8.7e-38 160.6 98 75.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 8.7e-38 160.6 93 81.7
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.1e-37 160.2 111 68.5
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.1e-37 160.2 100 73.0
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.1e-37 160.2 113 68.1
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.1e-37 160.2 90 83.3
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-37 160.2 114 70.2
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.5e-37 159.8 100 73.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.5e-37 159.8 116 67.2
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.9e-37 159.5 100 74.0
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.3e-37 158.7 98 74.5
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 3.3e-37 158.7 90 83.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 3.3e-37 158.7 90 83.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 5.7e-37 157.9 110 70.9
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 5.7e-37 157.9 100 73.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 7.4e-37 157.5 98 72.4
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 7.4e-37 157.5 99 76.8
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.3e-36 156.8 113 67.3
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.6e-36 156.4 98 74.5
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.6e-36 156.4 114 65.8
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.1e-36 156.0 124 66.9
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.1e-36 156.0 114 66.7
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.4e-35 153.3 104 73.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.8e-35 152.9 112 65.2
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.4e-35 152.5 119 63.9
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.1e-35 151.8 89 80.9
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 5.3e-35 151.4 115 66.1
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.5e-34 149.8 91 76.9
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.7e-33 146.4 100 70.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.8e-33 145.2 108 63.9
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.9e-32 142.9 89 77.5
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.3e-30 136.7 80 81.2
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 3.9e-30 135.2 90 67.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 5.7e-29 131.3 87 69.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.1e-27 125.2 173 42.8
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.4e-24 116.7 69 79.7
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.6e-23 113.2 119 48.7
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.4e-22 110.2 89 62.9
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 3.3e-21 105.5 98 57.1
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 8.2e-20 100.9 75 68.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.1e-19 100.5 99 54.5
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 5.3e-19 98.2 89 49.4
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 4.5e-18 95.1 65 67.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 8.5e-17 90.9 103 48.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 7.9e-15 84.3 61 59.0
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 6.7e-14 81.3 113 43.4
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.8e-14 80.9 126 34.9
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 5.7e-13 78.2 45 80.0
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.1e-11 72.4 70 57.1
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.6e-10 70.1 98 34.7
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.5e-10 68.9 36 91.7
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 3.2e-08 62.4 51 64.7
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.8e-06 56.6 124 33.9


User provided reference genes

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