Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 9.7e-178 626.7 318 100.0
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 2.3e-150 535.8 280 97.9
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-150 534.3 280 98.2
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 1.5e-149 533.1 280 98.2
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 1.5e-149 533.1 280 98.2
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 5.5e-149 531.2 300 92.3
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 4.9e-145 518.1 300 91.3
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 6.6e-118 427.9 229 96.1
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 3.8e-113 412.1 208 98.6
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 8.1e-100 367.9 221 87.3
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 3.7e-92 342.4 261 70.1
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 1.0e-86 324.3 313 56.9
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 5.1e-86 322.0 313 56.5
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 7.6e-82 308.1 286 58.7
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 4.9e-81 305.4 285 59.3
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 4.9e-81 305.4 292 56.8
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 8.4e-81 304.7 262 59.9
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 2.1e-79 300.1 277 58.8
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-77 294.3 309 53.4
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 3.1e-75 286.2 312 51.6
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 6.9e-75 285.0 263 58.6
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-74 284.3 262 57.6
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 7.7e-74 281.6 216 64.4
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 1.0e-73 281.2 263 57.4
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 1.1e-69 267.7 311 50.8
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 2.2e-68 263.5 311 50.2
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 3.7e-68 262.7 234 60.3
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 3.1e-67 259.6 313 50.5
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 5.3e-67 258.8 314 50.6
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 5.9e-66 255.4 206 62.6
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-65 251.9 218 59.6
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 1.4e-64 250.8 263 52.9
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 2.7e-63 246.5 311 48.2
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 3.9e-62 242.7 262 52.7
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 2.8e-60 236.5 236 56.8
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 4.8e-60 235.7 310 43.9
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 6.3e-60 235.3 275 51.3
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 1.8e-59 233.8 257 52.1
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 9.1e-59 231.5 297 46.5
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 3.5e-58 229.6 153 70.6
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 7.7e-58 228.4 311 45.0
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 5.0e-57 225.7 310 47.7
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-57 225.3 320 42.5
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 6.5e-57 225.3 320 42.5
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 7.2e-56 221.9 207 58.0
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 1.2e-55 221.1 319 41.1
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 2.1e-55 220.3 184 63.0
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 3.6e-55 219.5 284 45.8
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 1.8e-54 217.2 320 41.2
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 5.2e-54 215.7 320 40.9
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 6.7e-54 215.3 225 49.8
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 3.3e-53 213.0 309 43.4
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 7.4e-53 211.8 203 58.1
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 4.8e-52 209.1 285 42.8
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 8.2e-52 208.4 312 39.7
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 4.1e-51 206.1 277 44.0
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 1.6e-50 204.1 153 64.7
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 2.6e-50 203.4 284 47.9
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 7.7e-50 201.8 263 47.9
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 7.2e-48 195.3 230 51.7
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 6.1e-47 192.2 309 41.4
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.6e-45 186.8 261 44.8
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 6.3e-44 182.2 257 41.2
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 1.3e-41 174.5 262 42.4
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 2.9e-41 173.3 298 37.9
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 6.5e-41 172.2 167 56.3
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 7.2e-40 168.7 293 38.2
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 7.2e-40 168.7 293 38.2
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 8.0e-39 165.2 196 46.4
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 2.3e-38 163.7 161 52.2
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 8.3e-36 155.2 267 37.5
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 8.3e-36 155.2 232 40.9
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 1.4e-35 154.5 198 44.9
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 1.8e-35 154.1 229 45.4
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 3.8e-33 146.4 139 51.8
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 5.0e-33 146.0 126 61.9
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 6.6e-33 145.6 139 51.1
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 6.6e-33 145.6 139 51.1
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-32 144.8 143 58.0
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 9.5e-32 141.7 235 41.7
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 6.8e-30 135.6 230 38.3
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 1.7e-28 131.0 88 69.3
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.7e-26 123.6 79 72.2
C03p27680 Brassica napus HOM05D004230 ORTHO05D007976 1.7e-25 120.9 229 39.7
C02p19260 Brassica napus HOM05D004230 ORTHO05D007976 2.3e-25 120.6 124 48.4
BolC5t33361H Brassica oleracea HOM05D004230 ORTHO05D007976 1.1e-24 118.2 128 53.1
CARHR102540 Cardamine hirsuta HOM05D004230 ORTHO05D007976 4.7e-23 112.8 138 42.8
BolC4t25589H Brassica oleracea HOM05D004230 ORTHO05D007976 6.1e-23 112.5 97 56.7
Sp1g33580 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.4e-22 111.3 158 46.2
C08p29240 Brassica napus HOM05D004230 ORTHO05D027608 6.8e-22 109.0 165 46.1
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 2.6e-21 107.1 107 53.3
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 2.6e-21 107.1 107 53.3
Sp4g09110 Schrenkiella parvula HOM05D004230 ORTHO05D000563 1.3e-20 104.8 255 31.4
BcaC03g18110 Brassica carinata HOM05D004230 ORTHO05D007976 2.2e-20 104.0 97 49.5
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 3.7e-20 103.2 181 34.3
C07p53510 Brassica napus HOM05D004230 ORTHO05D027608 6.4e-20 102.4 165 44.2
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 1.1e-19 101.7 125 47.2
C07p28690 Brassica napus HOM05D004230 ORTHO05D007976 6.0e-18 95.9 75 61.3
BolC7t43407H Brassica oleracea HOM05D004230 ORTHO05D007976 6.0e-18 95.9 75 61.3
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 3.9e-17 93.2 183 36.1
BolC4t26773H Brassica oleracea HOM05D004230 ORTHO05D007976 5.0e-17 92.8 92 54.3
BcaC01g00380 Brassica carinata HOM05D004230 ORTHO05D007976 5.6e-16 89.4 96 44.8
AL1G50740 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 9.5e-16 88.6 83 54.2
BcaC02g08607 Brassica carinata HOM05D004230 ORTHO05D018474 2.1e-15 87.4 170 34.7
BolC2t12233H Brassica oleracea HOM05D004230 ORTHO05D007976 4.7e-15 86.3 75 53.3
CARHR034450 Cardamine hirsuta HOM05D004230 ORTHO05D007976 4.7e-15 86.3 81 51.9
AT5G36080 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.1e-14 83.6 78 47.4
A01p37400 Brassica napus HOM05D004230 ORTHO05D021768 7.5e-13 79.0 88 46.6
A09p29770 Brassica napus HOM05D004230 ORTHO05D007976 2.2e-12 77.4 144 38.2
BcaC07g39750 Brassica carinata HOM05D004230 ORTHO05D027608 2.9e-12 77.0 139 41.7
BolC3t20148H Brassica oleracea HOM05D004230 ORTHO05D007976 2.9e-12 77.0 70 51.4
BolC8t50525H Brassica oleracea HOM05D004230 ORTHO05D027608 2.9e-12 77.0 139 41.7
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 1.9e-11 74.3 165 32.7
THA.LOC104819338 Tarenaya hassleriana HOM05D004230 ORTHO05D014126 2.7e-10 70.5 136 31.6
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 3.5e-10 70.1 92 43.5
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.5e-10 70.1 133 38.3
CARHR113870 Cardamine hirsuta HOM05D004230 ORTHO05D007976 1.0e-09 68.6 64 51.6
A01p32030 Brassica napus HOM05D004230 ORTHO05D024011 1.7e-09 67.8 65 52.3
C01p41060 Brassica napus HOM05D004230 ORTHO05D021768 1.7e-09 67.8 96 40.6
BolC3t20713H Brassica oleracea HOM05D004230 ORTHO05D007976 6.6e-09 65.9 116 42.2
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 4.3e-08 63.2 51 56.9
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 4.3e-08 63.2 51 56.9
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 7.3e-08 62.4 162 30.9
C07p04500 Brassica napus HOM05D004230 ORTHO05D007976 1.2e-07 61.6 100 34.0
BcaB04g18000 Brassica carinata HOM05D004230 ORTHO05D007976 1.6e-07 61.2 67 58.2
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 1.6e-07 61.2 171 26.3
BcaC08g45606 Brassica carinata HOM05D015886 ORTHO05D017549 1.6e-07 61.2 161 28.6
BolC3t18593H Brassica oleracea HOM05D004230 ORTHO05D018474 1.6e-07 61.2 148 30.4
BolC4t26781H Brassica oleracea HOM05D004230 ORTHO05D018474 1.6e-07 61.2 148 31.1
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 3.6e-07 60.1 178 27.5
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 4.7e-07 59.7 205 27.3
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 4.7e-07 59.7 179 28.5
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 8.1e-07 58.9 209 26.3
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 8.1e-07 58.9 209 26.3
BcaC09g49285 Brassica carinata HOM05D004230 ORTHO05D032226 8.1e-07 58.9 67 46.3
BraA09t39106Z Brassica rapa HOM05D004230 ORTHO05D007976 1.1e-06 58.5 73 46.6
BcaC01g02567 Brassica carinata HOM05D004230 ORTHO05D018474 1.4e-06 58.2 148 29.7
BolC7t40845H Brassica oleracea HOM05D004230 ORTHO05D007976 2.3e-06 57.4 100 33.0
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 2.3e-06 57.4 44 59.1
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 4.0e-06 56.6 144 28.5
arahy.Tifrunner.gnm1.ann1.1GV9MA Arachis hypogaea HOM05D000451 ORTHO05D000351 6.8e-06 55.8 122 26.2
BolC2t07759H Brassica oleracea HOM05D006735 ORTHO05D009558 6.8e-06 55.8 102 30.4


User provided reference genes

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