Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p22750 Brassica napus HOM05D000052 ORTHO05D039568 5.4e-13 76.3 35 100.0
BcaC03g17874 Brassica carinata HOM05D000052 ORTHO05D039568 4.5e-12 73.2 34 94.1
A02p39400 Brassica napus HOM05D000052 ORTHO05D000046 4.5e-12 73.2 34 94.1
BolC2t11968H Brassica oleracea HOM05D000052 ORTHO05D000046 4.5e-12 73.2 34 94.1
BraA02t08909Z Brassica rapa HOM05D000052 ORTHO05D000046 4.5e-12 73.2 34 94.1
Sp2g21340 Schrenkiella parvula HOM05D000052 ORTHO05D000046 1.7e-11 71.2 34 88.2
AL6G38490 Arabidopsis lyrata HOM05D000052 ORTHO05D000046 2.3e-11 70.9 34 85.3
AT5G26700 Arabidopsis thaliana HOM05D000052 ORTHO05D000046 2.3e-11 70.9 34 85.3
CARHR186930 Cardamine hirsuta HOM05D000052 ORTHO05D000046 2.3e-11 70.9 34 85.3
Thhalv10004900m.g Eutrema salsugineum HOM05D000052 ORTHO05D000046 2.3e-11 70.9 34 85.3
BcaC04g23628 Brassica carinata HOM05D000052 ORTHO05D000046 3.9e-11 70.1 34 88.2
A09p05750 Brassica napus HOM05D000052 ORTHO05D000046 3.9e-11 70.1 34 88.2
C09p06350 Brassica napus HOM05D000052 ORTHO05D000046 3.9e-11 70.1 34 88.2
BraA09t36216Z Brassica rapa HOM05D000052 ORTHO05D000046 3.9e-11 70.1 34 88.2
Carub.0006s2426 Capsella rubella HOM05D000052 ORTHO05D000046 3.9e-11 70.1 34 85.3
BcaB04g19724 Brassica carinata HOM05D000052 ORTHO05D000046 5.0e-11 69.7 34 85.3
BcaB07g29966 Brassica carinata HOM05D000052 ORTHO05D000046 5.0e-11 69.7 34 91.2
BolC9t53554H Brassica oleracea HOM05D000052 ORTHO05D000046 8.6e-11 68.9 34 85.3
A06p36860 Brassica napus HOM05D000052 ORTHO05D000046 1.1e-10 68.6 34 85.3
BraA06t26612Z Brassica rapa HOM05D000052 ORTHO05D000046 1.1e-10 68.6 34 85.3
C07p41640 Brassica napus HOM05D000052 ORTHO05D000046 3.3e-10 67.0 34 82.4
BolC7t44698H Brassica oleracea HOM05D000052 ORTHO05D000046 3.3e-10 67.0 34 82.4
Aa31LG11G10010 Aethionema arabicum HOM05D000052 ORTHO05D000046 7.3e-10 65.9 34 82.4
AL3G16690 Arabidopsis lyrata HOM05D000052 ORTHO05D000046 9.5e-10 65.5 34 82.4
AT3G05930 Arabidopsis thaliana HOM05D000052 ORTHO05D000046 2.1e-09 64.3 34 79.4
Aa31LG5G16340 Aethionema arabicum HOM05D000052 ORTHO05D000046 6.1e-09 62.8 34 73.5
CARHR080390 Cardamine hirsuta HOM05D000052 ORTHO05D000046 1.4e-08 61.6 34 76.5
Thhalv10021490m.g Eutrema salsugineum HOM05D000052 ORTHO05D000046 8.9e-08 58.9 34 79.4
BcaB04g19234 Brassica carinata HOM05D000052 ORTHO05D000046 2.6e-07 57.4 34 73.5
PSO210G4582 Papaver somniferum HOM05D000052 ORTHO05D000046 2.6e-07 57.4 34 70.6
PSO761G0443 Papaver somniferum HOM05D000052 ORTHO05D000046 2.6e-07 57.4 34 70.6
EL10Ac6g15566 Beta vulgaris HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 61.8
BcaB03g13303 Brassica carinata HOM05D000052 ORTHO05D000046 3.4e-07 57.0 33 69.7
BcaC01g04308 Brassica carinata HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 70.6
A03p34370 Brassica napus HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 70.6
C03p41840 Brassica napus HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 70.6
BraA03t12613Z Brassica rapa HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 70.6
Sp3g04820 Schrenkiella parvula HOM05D000052 ORTHO05D000046 3.4e-07 57.0 34 76.5
BcaC05g30078 Brassica carinata HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
A05p42130 Brassica napus HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
C05p61340 Brassica napus HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
BolC5t34793H Brassica oleracea HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
BraA05t22931Z Brassica rapa HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
THA.LOC104818767 Tarenaya hassleriana HOM05D000052 ORTHO05D000046 7.5e-07 55.8 33 69.7
Zm00001eb301380 Zea mays HOM05D000052 ORTHO05D000046 7.5e-07 55.8 34 70.6
BcaC09g47862 Brassica carinata HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 73.5
BolC1t05652H Brassica oleracea HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 73.5
BraA01t04463Z Brassica rapa HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 73.5
CiPaw.08G124600 Carya illinoinensis HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 64.7
FAN05G1574 Fragaria x ananassa HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 64.7
RcHm_v2.0_Chr3g0458991 Rosa chinensis HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 64.7
Sc11g0005380 Simmondsia chinensis HOM05D000052 ORTHO05D000046 9.8e-07 55.5 34 67.6
EL10Ac4g08192 Beta vulgaris HOM05D000052 ORTHO05D000046 1.3e-06 55.1 34 58.8
MD04G1184000 Malus domestica HOM05D000052 ORTHO05D000046 1.3e-06 55.1 34 67.6
Sp1g08160 Schrenkiella parvula HOM05D000052 ORTHO05D000046 1.3e-06 55.1 33 69.7
GSVIVG01031351001 Vitis vinifera HOM05D000052 ORTHO05D000046 1.3e-06 55.1 34 61.8
Aa31LG1G5470 Aethionema arabicum HOM05D000052 ORTHO05D000046 2.2e-06 54.3 32 68.8
MSTRG.6482 Avicennia marina HOM05D000052 ORTHO05D000046 2.2e-06 54.3 32 65.6
BraA01t03156Z Brassica rapa HOM05D000052 ORTHO05D000046 2.2e-06 54.3 33 75.8
Ciclev10022159m.g Citrus clementina HOM05D000052 ORTHO05D000046 2.2e-06 54.3 33 63.6
Glyma.03G227400 Glycine max HOM05D000052 ORTHO05D000046 2.2e-06 54.3 32 68.8
Phvul.001G221200 Phaseolus vulgaris HOM05D000052 ORTHO05D000046 2.2e-06 54.3 32 68.8
VMungo1383G0833 Vigna mungo HOM05D000052 ORTHO05D000046 2.2e-06 54.3 32 68.8
BcaC07g41873 Brassica carinata HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
A06p06250 Brassica napus HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
A09p65430 Brassica napus HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
C08p49400 Brassica napus HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
BolC3t16467H Brassica oleracea HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 67.6
BolC5t29512H Brassica oleracea HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
BolC8t52476H Brassica oleracea HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
BraA06t23836Z Brassica rapa HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
Cpa.g.sc48.230 Carica papaya HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 58.8
Thhalv10008725m.g Eutrema salsugineum HOM05D000052 ORTHO05D000046 2.9e-06 53.9 33 66.7
FvH4_6g08730 Fragaria vesca HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
FvH4_6g08740 Fragaria vesca HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
FAN02G1487 Fragaria x ananassa HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
FAN02G2887 Fragaria x ananassa HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
FAN14G0691 Fragaria x ananassa HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
FAN14G1553 Fragaria x ananassa HOM05D000052 ORTHO05D000046 2.9e-06 53.9 34 61.8
Ah.13g069110 Amaranthus hybridus HOM05D000052 ORTHO05D000046 3.7e-06 53.5 34 61.8
ATR0796G224 Amborella trichopoda HOM05D000052 ORTHO05D000046 3.7e-06 53.5 34 61.8
C05p07580 Brassica napus HOM05D000052 ORTHO05D000046 3.7e-06 53.5 33 63.6
Carub.0001s0890 Capsella rubella HOM05D000052 ORTHO05D000046 3.7e-06 53.5 33 63.6
MBI18_g03862_MAGBIO Magnolia biondii HOM05D000052 ORTHO05D000046 3.7e-06 53.5 34 64.7
TWI59G1277 Tripterygium wilfordii HOM05D000052 ORTHO05D000046 3.7e-06 53.5 34 61.8
EL10Ac4g08191 Beta vulgaris HOM05D000052 ORTHO05D000046 4.9e-06 53.1 34 55.9
CARHR009530 Cardamine hirsuta HOM05D000052 ORTHO05D000046 4.9e-06 53.1 33 63.6
PSO104G0198 Papaver somniferum HOM05D000052 ORTHO05D000046 4.9e-06 53.1 33 63.6
PSO210G3149 Papaver somniferum HOM05D000052 ORTHO05D000046 4.9e-06 53.1 34 64.7
RcHm_v2.0_Chr3g0459001 Rosa chinensis HOM05D000052 ORTHO05D000046 4.9e-06 53.1 34 61.8
arahy.Tifrunner.gnm1.ann1.X0SLY5 Arachis hypogaea HOM05D000052 ORTHO05D000046 6.4e-06 52.8 31 67.7
Glyma.19G224300 Glycine max HOM05D000052 ORTHO05D000046 6.4e-06 52.8 32 65.6
PSO063G5451 Papaver somniferum HOM05D000052 ORTHO05D000046 6.4e-06 52.8 33 60.6
TAR362G1051 Trochodendron aralioides HOM05D000052 ORTHO05D000046 6.4e-06 52.8 34 61.8
Aqoxy2G00328 Aquilegia oxysepala HOM05D000052 ORTHO05D000046 8.3e-06 52.4 34 61.8
BcaC07g38518 Brassica carinata HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
A08p34490 Brassica napus HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
C08p12980 Brassica napus HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
BolC8t48928H Brassica oleracea HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
BraA08t35360Z Brassica rapa HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
Migut.N00984 Erythranthe guttata HOM05D000052 ORTHO05D000046 8.3e-06 52.4 34 70.6
Gohir.A12G118800 Gossypium hirsutum HOM05D000052 ORTHO05D000046 8.3e-06 52.4 34 64.7
Oeu034764.1 Olea europaea HOM05D000052 ORTHO05D000046 8.3e-06 52.4 34 67.6
PSO063G5801 Papaver somniferum HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6
PSO104G0004 Papaver somniferum HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 60.6
PSO104G0232 Papaver somniferum HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 60.6
PSO421G0161 Papaver somniferum HOM05D000052 ORTHO05D000046 8.3e-06 52.4 33 63.6


User provided reference genes

Program Settings