Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 1.4e-57 226.1 113 100.0
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 5.2e-57 224.2 113 99.1
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 6.7e-49 197.2 98 100.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 3.8e-36 154.8 112 74.1
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 5.5e-35 151.0 101 77.2
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 7.2e-35 150.6 95 78.9
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 2.8e-34 148.7 95 80.0
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 3.0e-33 145.2 112 70.5
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 6.8e-33 144.1 120 65.8
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 6.8e-33 144.1 120 65.8
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 6.8e-33 144.1 120 65.8
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.0e-32 142.5 112 70.5
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 7.5e-32 140.6 120 65.0
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 7.5e-32 140.6 120 65.0
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 7.5e-32 140.6 112 67.9
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 2.1e-18 95.9 113 50.4
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 6.0e-13 77.8 94 43.6
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.2e-10 70.1 87 39.1
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 2.8e-10 68.9 62 54.8
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 3.6e-10 68.6 105 37.1
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 4.7e-10 68.2 99 39.4
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.2e-10 67.8 74 43.2
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.3e-09 65.9 104 37.5
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 2.3e-09 65.9 105 40.0
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.3e-09 65.9 120 37.5
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.0e-09 65.1 104 37.5
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 4.0e-09 65.1 104 37.5
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 6.8e-09 64.3 110 33.6
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 8.9e-09 63.9 110 32.7
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 1.2e-08 63.5 61 54.1
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 1.5e-08 63.2 104 37.5
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 1.5e-08 63.2 67 52.2
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-08 62.8 96 37.5
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 2.0e-08 62.8 122 39.3
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.4e-08 62.0 96 36.5
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 3.4e-08 62.0 61 42.6
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 4.4e-08 61.6 107 34.6
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 5.8e-08 61.2 92 38.0
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 7.5e-08 60.8 49 53.1
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.3e-07 60.1 62 51.6
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 1.7e-07 59.7 60 50.0
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.7e-07 59.7 60 53.3
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.7e-07 59.7 54 59.3
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 1.7e-07 59.7 62 48.4
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 2.9e-07 58.9 96 34.4
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 4.9e-07 58.2 62 51.6
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 6.4e-07 57.8 61 49.2
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 6.4e-07 57.8 55 52.7
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 8.3e-07 57.4 75 45.3
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.1e-06 57.0 60 46.7
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.1e-06 57.0 73 32.9
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.4e-06 56.6 88 36.4
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.9e-06 56.2 60 46.7
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 2.4e-06 55.8 54 44.4
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 2.4e-06 55.8 122 36.1
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 2.4e-06 55.8 95 35.8
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 3.2e-06 55.5 60 46.7
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 4.1e-06 55.1 51 47.1
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 5.4e-06 54.7 56 50.0
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 5.4e-06 54.7 68 47.1
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 5.4e-06 54.7 96 38.5
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 7.1e-06 54.3 60 45.0
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 9.2e-06 53.9 40 62.5


User provided reference genes

Program Settings