Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 7.5e-50 200.3 106 100.0
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 4.8e-49 197.6 106 98.1
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-48 195.7 106 90.6
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 5.4e-48 194.1 107 98.1
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-45 186.0 107 93.5
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-42 174.9 108 88.0
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.2e-40 166.8 106 75.5
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.9e-38 161.8 106 75.5
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.3e-35 152.1 106 71.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 8.9e-35 150.2 106 69.8
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.9e-33 144.4 106 67.0
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 4.7e-28 127.9 96 67.7
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 5.2e-27 124.4 97 64.9
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 5.2e-27 124.4 97 64.9
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 8.9e-27 123.6 96 64.6
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 2.0e-26 122.5 97 62.9
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.4e-24 115.5 111 59.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.5e-21 105.5 107 52.3
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.5e-21 103.6 109 56.9
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.8e-19 97.4 68 66.2
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.0e-18 95.9 68 66.2
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 7.5e-18 94.0 106 48.1
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 2.2e-17 92.4 64 68.8
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-17 92.0 106 53.8
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 8.3e-17 90.5 106 53.8
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 3.2e-16 88.6 63 66.7
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 3.2e-16 88.6 63 66.7
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 3.2e-16 88.6 63 66.7
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 9.2e-16 87.0 106 48.1
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.7e-15 85.5 64 64.1
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.7e-15 85.5 64 64.1
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-14 82.8 69 53.6
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.9e-14 81.6 68 58.8
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-13 80.1 106 50.9
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-13 79.7 64 59.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.3e-13 78.2 64 56.2
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.6e-13 77.8 67 58.2
BcaC08g43286 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-13 77.4 41 82.9
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.1e-12 75.9 62 58.1
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 4.7e-12 74.7 67 56.7
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 6.2e-12 74.3 73 50.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.1e-12 73.9 73 50.7
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.1e-11 73.6 68 57.4
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.1e-11 73.6 64 54.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.4e-11 73.2 68 54.4
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.3e-11 72.4 68 47.1
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.1e-11 72.0 68 52.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.1e-11 72.0 68 52.9
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.0e-11 71.6 65 55.4
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 5.2e-11 71.2 60 63.3
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 8.9e-11 70.5 68 47.1
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.5e-10 69.7 68 51.5
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.4e-10 68.6 63 57.1
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 3.4e-10 68.6 63 52.4
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.4e-10 68.2 69 49.3
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 4.4e-10 68.2 63 54.0
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 7.6e-10 67.4 63 54.0
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 7.6e-10 67.4 62 56.5
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 9.9e-10 67.0 63 52.4
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.3e-09 66.6 69 44.9
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.7e-09 66.2 68 50.0
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-09 65.5 51 70.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.8e-09 65.1 68 50.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.4e-09 64.3 69 47.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 8.4e-09 63.9 63 54.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-08 63.5 63 47.6
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.4e-08 63.2 68 39.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 52.4
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-08 62.8 68 42.6
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.9e-08 62.8 63 47.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.4e-08 62.4 68 41.2
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.2e-08 62.0 68 39.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.2e-08 62.0 62 48.4
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 50.8
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.1e-08 61.6 64 50.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 50.8
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 50.8
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 5.4e-08 61.2 62 51.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 7.1e-08 60.8 68 41.2
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 7.1e-08 60.8 63 50.8
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.2e-08 60.5 40 75.0
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 9.2e-08 60.5 68 45.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.2e-08 60.5 63 50.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 38.2
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 38.2
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.2e-07 60.1 63 50.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.6e-07 59.7 64 51.6
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.6e-07 59.7 68 39.7
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.6e-07 59.7 68 41.2
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.6e-07 59.7 68 41.2
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-07 59.3 68 38.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-07 59.3 68 38.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-07 59.3 103 35.0
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-07 59.3 103 35.0
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.1e-07 59.3 68 38.2
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.7e-07 58.9 62 48.4
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 6.0e-07 57.8 63 50.8
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 7.8e-07 57.4 65 49.2
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.0e-06 57.0 54 51.9
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.0e-06 57.0 92 32.6
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 1.3e-06 56.6 53 50.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.9e-06 55.1 96 36.5
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 6.6e-06 54.3 62 37.1
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 6.6e-06 54.3 62 45.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 6.6e-06 54.3 68 42.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.6e-06 54.3 68 41.2


User provided reference genes

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