Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 9.2e-21 102.8 60 100.0
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 9.2e-21 102.8 60 100.0
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 9.2e-21 102.8 60 100.0
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 3.9e-19 97.4 60 95.0
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 3.9e-19 97.4 60 95.0
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 6.2e-17 90.1 60 86.7
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 5.2e-16 87.0 60 85.0
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 83.3
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 1.2e-15 85.9 60 83.3
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 2.0e-15 85.1 60 83.3
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 2.6e-15 84.7 60 81.7
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 3.4e-15 84.3 60 81.7
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 3.4e-15 84.3 60 81.7
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 4.4e-15 84.0 60 83.3
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 7.5e-15 83.2 60 81.7
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.2e-12 75.9 60 73.3
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.0e-11 72.8 61 75.4
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 1.0e-11 72.8 61 75.4
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 1.3e-11 72.4 61 73.8
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 72.1
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 5.1e-11 70.5 60 63.3
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 2.5e-10 68.2 61 72.1
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 2.5e-10 68.2 61 72.1
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 2.5e-10 68.2 61 72.1
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 67.2
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 4.3e-10 67.4 61 70.5
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 4.3e-10 67.4 61 70.5
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 9.5e-10 66.2 61 68.9
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 9.5e-10 66.2 61 68.9
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 2.1e-09 65.1 61 65.6
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 4.7e-09 63.9 61 65.6
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 6.2e-09 63.5 61 67.2
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 1.1e-08 62.8 60 61.7
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 1.4e-08 62.4 60 58.3
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 2.3e-08 61.6 60 53.3
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 3.1e-08 61.2 61 57.4
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 3.1e-08 61.2 60 60.0
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 5.2e-08 60.5 60 60.0
CANSAT78G1478 Cannabis sativa HOM05D004778 ORTHO05D005679 1.2e-07 59.3 60 56.7
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 1.2e-07 59.3 60 56.7
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 1.5e-07 58.9 60 55.0
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 2.0e-07 58.5 60 56.7
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 60.7
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 2.6e-07 58.2 60 53.3
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 2.6e-07 58.2 60 53.3
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 3.4e-07 57.8 61 57.4
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 3.4e-07 57.8 58 55.2
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 3.4e-07 57.8 60 53.3
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 4.4e-07 57.4 61 57.4
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 4.4e-07 57.4 61 57.4
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 4.4e-07 57.4 61 57.4
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 5.8e-07 57.0 62 56.5
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 5.8e-07 57.0 60 53.3
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 5.8e-07 57.0 60 56.7
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 5.8e-07 57.0 60 56.7
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 7.6e-07 56.6 62 54.8
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 7.6e-07 56.6 62 54.8
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 7.6e-07 56.6 60 53.3
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 7.6e-07 56.6 60 56.7
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 9.9e-07 56.2 60 51.7
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 1.3e-06 55.8 60 51.7
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 55.7
Sabra03G0164400 Salix brachista HOM05D004778 ORTHO05D005679 1.3e-06 55.8 53 52.8
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 1.7e-06 55.5 61 59.0
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 2.2e-06 55.1 62 53.2
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 2.2e-06 55.1 58 51.7
PSO339G1550 Papaver somniferum HOM05D004778 ORTHO05D005679 2.9e-06 54.7 60 55.0
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 3.7e-06 54.3 60 51.7
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 4.9e-06 53.9 57 57.9
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 6.4e-06 53.5 60 51.7
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 8.4e-06 53.1 61 55.7


User provided reference genes

Program Settings