Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1474.1 761 100.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1474.1 761 100.0
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1440.6 761 97.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1440.6 761 97.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1364.0 761 92.1
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1345.9 761 91.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1342.8 761 91.2
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1342.8 761 91.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1333.9 761 90.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1333.9 761 90.8
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 0.0e+00 1326.2 762 90.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1284.2 761 87.5
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1271.9 761 85.9
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 0.0e+00 1265.8 761 86.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1241.1 707 91.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 0.0e+00 1208.7 786 80.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1205.3 761 82.4
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1199.9 761 81.1
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1143.6 757 77.5
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1115.1 763 77.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.4e-302 1042.7 751 71.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 9.7e-301 1036.6 763 72.5
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.2e-300 1035.4 764 69.5
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 9.1e-299 1030.0 762 69.8
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 9.1e-299 1030.0 762 69.8
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.5e-298 1028.1 762 72.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 5.0e-297 1024.2 772 68.9
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 764 71.6
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 764 71.6
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 750 68.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.2e-293 1013.1 752 68.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.4e-293 1011.1 753 68.3
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 6.3e-292 1007.3 761 67.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.8e-291 1005.7 756 68.3
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 7.0e-291 1003.8 756 67.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 7.0e-291 1003.8 748 68.0
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 9.1e-291 1003.4 748 68.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.2e-290 1003.0 753 68.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.7e-290 1001.9 751 67.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.5e-290 1001.5 751 67.8
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 751 68.3
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 5.9e-290 1000.7 753 68.0
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 5.9e-290 1000.7 748 68.3
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.3e-289 999.6 752 68.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.2e-289 998.8 727 72.9
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.5e-288 996.1 747 68.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 4.2e-288 994.6 751 67.5
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 9.4e-288 993.4 758 67.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.2e-287 993.0 758 66.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 6.1e-287 990.7 748 68.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 8.0e-287 990.3 756 66.9
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.0e-286 989.9 750 67.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.0e-286 988.4 742 67.9
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 4.0e-286 988.0 754 66.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 4.0e-286 988.0 750 66.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 1.2e-285 986.5 767 66.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.5e-285 986.1 762 67.2
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.6e-285 985.3 767 66.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 5.7e-285 984.2 747 67.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.1e-283 979.9 759 66.8
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 4.1e-283 978.0 761 67.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 4.1e-283 978.0 753 66.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.6e-282 976.1 755 66.8
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.7e-282 973.8 747 66.8
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 7.7e-282 973.8 756 66.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.0e-281 973.4 751 67.0
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 6.6e-281 970.7 771 65.2
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 4.2e-280 968.0 745 66.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 6.1e-279 964.1 792 63.8
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 8.0e-279 963.8 750 66.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.2e-278 961.1 756 66.1
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.0e-277 959.1 763 64.6
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 5.7e-277 957.6 747 65.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.3e-276 956.4 765 64.7
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.8e-276 955.3 763 64.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 4.9e-276 954.5 746 65.5
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.0e-274 949.1 752 65.8
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.7e-274 948.7 756 64.0
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.0e-273 946.8 744 64.8
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.7e-273 946.0 755 64.6
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.1e-272 943.3 763 63.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 4.3e-272 941.4 745 65.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.4e-269 931.8 714 66.8
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 5.4e-267 924.5 745 63.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.6e-266 921.4 761 62.7
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.6e-266 921.4 745 63.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.0e-265 918.7 764 63.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.0e-265 917.9 752 62.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 6.6e-265 917.5 764 63.6
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.8e-263 912.1 755 62.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-262 910.2 733 68.8
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.8e-262 909.4 750 62.8
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 5.2e-262 907.9 759 62.8
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 5.2e-262 907.9 765 62.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.2e-261 906.7 763 62.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.6e-261 905.6 764 62.3
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.7e-260 902.9 749 61.9
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.1e-256 890.2 535 83.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.3e-256 888.6 746 63.3
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.8e-254 882.9 761 61.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.3e-252 876.7 746 61.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 9.5e-248 860.5 678 64.6
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.7e-247 858.2 767 59.7
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 7.6e-245 850.9 739 60.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.1e-240 837.0 625 68.5
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 3.4e-237 825.5 759 58.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.1e-235 820.5 744 57.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.0e-234 814.7 766 56.4
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 7.3e-232 807.7 816 53.6
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 5.3e-230 801.6 767 56.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.0e-226 788.1 656 61.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.1e-215 753.1 746 53.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.0e-214 748.8 640 62.5
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.0e-201 706.1 528 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.0e-200 703.4 745 50.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.7e-199 700.3 526 66.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.5e-197 693.7 533 65.5
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.5e-197 692.2 752 51.6
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 6.1e-194 681.8 766 49.1
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.8e-190 670.2 758 49.9
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 4.7e-186 655.6 547 64.4
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.3e-175 618.6 739 47.2
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.4e-153 547.7 756 44.2
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.7e-151 540.8 384 73.2
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 7.8e-149 531.9 607 48.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 7.6e-128 462.2 379 63.6
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.1e-110 405.2 345 58.8
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.2e-109 401.7 727 35.1
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 5.1e-100 369.8 474 47.0
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.2e-86 323.6 747 30.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 5.1e-76 290.0 833 28.5
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.7e-75 285.8 225 60.9
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.3e-66 258.8 227 63.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.2e-59 235.7 526 34.0
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.3e-44 184.9 237 48.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.0e-36 159.5 124 62.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-36 159.1 195 49.2
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-34 152.1 136 59.6
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 6.4e-34 150.2 197 46.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.3e-30 137.5 107 67.3
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 3.4e-27 127.9 240 37.1
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.7e-26 125.6 102 59.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.9e-26 124.8 138 50.0
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 4.9e-26 124.0 113 55.8
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.2e-24 119.4 80 73.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.1e-22 112.8 229 38.4
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.4e-17 95.1 98 49.0
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.7e-15 89.0 80 56.2
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.3e-15 88.6 92 51.1
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 2.5e-14 85.1 96 46.9
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.3e-14 84.7 65 61.5
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 8.9e-12 76.6 56 69.6
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-11 76.3 79 51.9
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.4e-11 74.7 73 56.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.4e-11 74.7 73 56.2
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 2.2e-10 72.0 73 54.8
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.2e-10 72.0 66 56.1
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 3.8e-10 71.2 67 55.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 4.9e-10 70.9 88 44.3
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.1e-09 67.0 63 57.1
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 7.1e-09 67.0 122 33.6


User provided reference genes

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