Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2608.6 1373 100.0
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 2440.6 1390 94.3
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 2431.4 1390 93.7
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 2428.3 1380 94.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 2271.9 1357 89.4
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 0.0e+00 1911.7 1452 74.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 0.0e+00 1768.4 1434 70.4
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 0.0e+00 1764.6 1453 70.1
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1759.6 1497 68.2
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1744.9 1438 70.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1743.8 1447 70.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1742.2 1445 70.2
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1738.8 1440 70.1
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 0.0e+00 1729.5 1442 69.5
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1728.8 1479 68.0
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1704.9 1448 68.6
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 0.0e+00 1673.3 1465 66.8
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1421.8 1422 61.0
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 0.0e+00 1408.3 1423 60.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1119.4 1507 49.6
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.9e-304 1047.3 1497 48.4
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 2.0e-187 661.0 1598 35.4
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 6.9e-180 636.0 1679 35.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.2e-178 630.9 1613 35.8
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.4e-177 628.2 1611 35.7
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 7.1e-177 625.9 1611 35.6
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.6e-176 623.2 1624 34.7
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 4.6e-176 623.2 1467 36.0
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.3e-173 615.1 1617 34.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 5.5e-169 599.7 1591 34.3
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.0e-162 578.9 1574 34.5
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.2e-155 555.4 1661 32.8
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 2.0e-155 554.7 1613 33.1
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.6e-155 554.3 1591 33.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.7e-154 551.6 1596 35.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 2.2e-154 551.2 1640 33.5
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 8.5e-154 549.3 1614 34.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.4e-153 548.5 1603 33.4
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.5e-153 547.7 1573 33.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.2e-153 547.0 1562 33.4
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 6.7e-151 539.7 1706 32.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 6.7e-151 539.7 1616 33.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 6.7e-151 539.7 1597 33.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 5.7e-150 536.6 1611 33.5
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.2e-146 524.6 1632 33.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 5.0e-146 523.5 1622 33.2
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.2e-144 518.8 1677 32.0
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.1e-144 518.1 1610 33.4
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.7e-141 508.4 1582 32.6
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.8e-141 507.7 1679 32.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.4e-140 505.4 1576 32.9
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.4e-140 505.4 1656 32.2
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.6e-139 501.9 1592 32.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 5.9e-139 500.0 1560 33.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 5.0e-138 496.9 1598 32.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 4.2e-137 493.8 1635 32.4
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.0e-135 489.2 1395 33.8
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 2.0e-134 485.0 1557 32.2
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 7.5e-134 483.0 1606 31.9
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.3e-133 482.3 1604 32.6
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.8e-133 480.3 1600 31.7
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 8.3e-133 479.6 1568 31.8
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.8e-127 459.9 1575 31.0
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.6e-126 458.0 1356 33.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.8e-125 454.5 1560 31.2
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 8.3e-125 453.0 1567 31.5
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.1e-124 452.6 1603 31.3
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.6e-123 448.7 1591 30.7
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.5e-123 447.6 1609 30.3
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.5e-123 447.2 1607 31.5
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.8e-123 446.4 1668 30.7
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.8e-122 444.1 1577 30.9
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 5.6e-121 440.3 1596 31.3
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.3e-121 439.9 1604 30.9
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 7.3e-121 439.9 1613 30.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.8e-119 433.3 1651 30.0
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 6.8e-119 433.3 1516 30.5
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.6e-118 431.4 1566 31.0
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 3.4e-118 431.0 1570 30.4
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 4.4e-118 430.6 1586 30.4
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.3e-117 429.1 1617 30.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.7e-117 428.7 1600 31.2
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.7e-117 428.7 1613 30.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.9e-117 427.2 1540 31.1
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.1e-116 426.0 1616 30.6
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.6e-115 422.2 1519 31.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.6e-115 422.2 1621 30.0
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 4.6e-115 420.6 1556 31.6
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.8e-111 408.7 1582 30.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 4.0e-111 407.5 1282 31.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 4.9e-109 400.6 1594 31.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.4e-108 399.1 1636 29.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 2.3e-106 391.7 1488 29.7
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.1e-105 389.4 1468 31.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.1e-104 385.2 1654 28.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 3.6e-104 384.4 1440 30.6
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.3e-101 375.9 1598 28.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.2e-101 375.2 1427 29.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 6.4e-101 373.6 1666 28.5
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.8e-99 366.7 1644 29.0
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.5e-97 362.5 623 41.1
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.9e-97 362.1 1588 28.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.1e-95 354.8 1725 29.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.0e-94 352.1 1639 28.9
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.0e-90 338.2 1551 30.2
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.9e-89 335.5 1518 28.3
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.5e-89 335.1 1578 27.9
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 2.8e-88 331.6 1626 27.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.1e-87 328.2 1547 28.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.2e-86 326.2 1523 27.4
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 6.4e-85 320.5 1536 28.2
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 2.1e-83 315.5 715 36.6
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.1e-81 309.7 1687 27.7
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.6e-80 305.8 1672 27.5
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 6.2e-80 303.9 1174 30.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.3e-72 279.6 1187 29.0
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.9e-69 268.5 344 52.3
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.1e-68 263.8 903 31.1
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 9.3e-68 263.5 1630 26.8
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 6.0e-67 260.8 1354 29.0
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.5e-60 238.8 1173 29.2
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 4.2e-60 238.0 1551 26.2
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.3e-58 233.0 549 37.2
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 9.0e-55 220.3 193 64.8
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.1e-52 213.4 212 59.0
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.6e-51 209.5 1347 26.4
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.0e-50 205.3 201 58.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 7.4e-49 200.7 636 32.5
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.0e-46 192.6 442 37.1
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.2e-44 184.1 1469 26.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 7.9e-43 180.6 1403 25.2
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.3e-40 173.3 1418 26.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-40 173.3 211 53.6
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.6e-38 165.6 1543 26.2
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.7e-37 162.9 1172 26.9
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.2e-34 151.4 1500 24.9
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.3e-31 141.4 471 32.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.7e-27 129.0 1161 26.2
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.4e-26 126.7 198 49.0
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 1.4e-26 126.7 198 49.0
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.0e-26 125.2 444 32.2
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.2e-22 113.6 86 67.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 7.7e-22 110.9 492 30.1
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.7e-21 109.8 296 38.5
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 4.2e-20 105.1 773 25.9
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.2e-20 104.4 507 29.2
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.7e-19 101.7 677 25.8
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.0e-18 100.5 482 26.6
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.4e-18 100.1 231 37.7
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.5e-17 94.4 897 27.0
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.5e-17 94.4 321 33.0
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.3e-13 83.6 472 29.4
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.6e-13 80.9 324 29.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 6.8e-10 71.2 470 29.4
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-07 63.5 182 30.2
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-06 59.7 141 34.8


User provided reference genes

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