Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-170 602.4 300 100.0
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 6.1e-166 587.4 300 98.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 6.1e-166 587.4 300 98.0
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.3e-149 532.3 300 90.7
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-144 516.2 288 88.2
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 9.3e-130 467.2 235 98.3
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.6e-116 422.5 230 88.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.2e-115 419.5 271 74.2
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.2e-113 413.7 257 76.7
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 2.7e-113 412.5 262 74.4
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.3e-112 410.2 255 76.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 8.7e-112 407.5 286 69.2
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 4.3e-111 405.2 262 73.7
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 7.4e-111 404.4 262 73.7
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 2.1e-110 402.9 262 73.7
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 8.2e-110 401.0 255 74.5
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-109 399.8 256 74.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 7.4e-95 351.3 258 63.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.7e-94 350.1 203 86.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.3e-94 348.2 297 57.2
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-93 347.1 301 56.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.8e-93 346.7 298 56.4
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.1e-93 344.4 302 56.3
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.6e-92 342.8 301 55.8
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.4e-92 342.4 297 56.2
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 7.7e-92 341.3 301 55.5
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 7.7e-92 341.3 301 55.8
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.7e-91 340.1 260 62.7
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-91 339.7 258 61.6
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-91 339.7 258 61.6
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.2e-91 339.7 258 61.6
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 5.0e-91 338.6 258 61.2
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.5e-90 336.3 258 60.5
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 9.4e-90 334.3 265 58.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 9.4e-90 334.3 259 61.4
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 2.1e-89 333.2 255 60.8
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.0e-88 330.9 289 55.7
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.4e-88 330.5 265 58.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.4e-88 330.5 258 60.5
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.8e-88 330.1 256 60.2
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 3.0e-88 329.3 262 58.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 6.7e-88 328.2 254 61.8
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 3.3e-87 325.9 296 54.4
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 3.3e-87 325.9 302 53.3
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 4.4e-87 325.5 253 61.3
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.3e-86 323.9 266 57.9
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.2e-86 323.2 252 58.7
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.8e-86 322.8 256 59.4
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 4.8e-86 322.0 255 59.2
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 4.8e-86 322.0 260 59.2
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 6.3e-86 321.6 266 59.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 8.2e-86 321.2 269 57.6
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 8.2e-86 321.2 256 59.4
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.1e-85 320.9 268 55.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.4e-85 320.5 256 59.4
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 3.1e-85 319.3 294 54.8
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.3e-85 318.5 272 57.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 7.0e-85 318.2 275 58.9
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.2e-84 317.4 258 58.5
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.0e-84 316.6 257 58.4
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.0e-84 316.6 257 58.4
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.0e-84 316.6 259 58.3
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.0e-84 316.6 252 58.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.5e-84 315.8 288 53.5
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 3.5e-84 315.8 255 57.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.5e-84 315.8 255 57.6
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 4.5e-84 315.5 258 57.4
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 4.5e-84 315.5 259 59.1
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 5.9e-84 315.1 256 59.4
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 5.9e-84 315.1 277 56.7
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 7.7e-84 314.7 256 57.0
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.0e-83 314.3 263 58.2
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-83 314.3 264 54.9
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.0e-83 314.3 272 55.5
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.0e-83 314.3 254 58.3
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.3e-83 313.9 271 56.5
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.3e-83 313.9 303 52.5
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.7e-83 313.5 272 55.5
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.7e-83 313.5 290 53.1
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.0e-83 312.0 267 57.3
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 5.0e-83 312.0 257 57.6
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 6.5e-83 311.6 259 56.0
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 6.5e-83 311.6 264 54.9
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 6.5e-83 311.6 257 58.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.1e-82 310.8 255 58.8
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.9e-82 310.1 253 56.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 3.2e-82 309.3 262 56.1
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 3.2e-82 309.3 297 53.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 4.2e-82 308.9 287 52.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 9.4e-82 307.8 264 54.9
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.7e-81 306.2 264 57.2
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.7e-81 306.2 229 62.9
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.6e-81 305.8 269 55.0
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.6e-81 305.8 271 55.0
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.5e-79 300.4 254 55.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.5e-79 298.1 259 56.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 1.3e-78 297.4 272 53.7
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-78 297.4 263 54.4
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.8e-77 293.5 256 53.9
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.2e-76 290.8 181 75.1
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.6e-76 290.4 273 53.5
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 2.7e-76 289.7 260 55.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 5.9e-76 288.5 234 56.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.7e-75 287.0 265 51.7
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 8.5e-75 284.6 262 51.5
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 7.2e-74 281.6 263 52.5
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.1e-73 280.0 295 47.1
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.6e-73 279.3 273 49.8
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.0e-73 278.1 254 50.4
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.0e-72 276.2 254 51.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.0e-72 275.8 280 50.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 6.8e-72 275.0 255 51.8
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.8e-72 275.0 255 51.8
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 8.8e-72 274.6 263 49.8
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.5e-71 271.6 166 75.9
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.7e-70 270.4 214 59.8
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.4e-69 267.3 257 51.0
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.7e-68 263.1 257 48.6
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-68 262.3 261 49.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-68 262.3 261 49.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.3e-67 260.8 268 50.7
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-66 257.7 217 55.8
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-66 256.9 260 48.5
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-66 256.9 260 48.5
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.9e-66 256.9 231 53.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.6e-65 253.8 256 52.3
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.1e-65 251.9 218 55.0
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.3e-64 250.0 214 54.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.4e-63 246.1 253 47.4
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.7e-63 245.4 147 78.2
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.3e-62 244.2 216 53.2
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 9.2e-61 238.0 173 65.3
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.9e-59 233.0 191 58.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 2.9e-59 233.0 253 48.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.5e-58 230.7 242 47.9
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 9.5e-58 228.0 181 59.1
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-54 216.1 269 45.0
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 3.3e-50 203.0 263 41.4
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-50 202.6 263 41.4
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 4.3e-50 202.6 177 53.7
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.1e-45 188.0 399 32.8
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-45 187.6 272 41.9
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.7e-43 180.6 253 41.9
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.1e-41 173.7 237 40.9
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 6.2e-41 172.2 166 50.6
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.7e-36 156.8 109 70.6
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.6e-33 146.4 124 55.6
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.4e-31 139.8 112 57.1
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 7.6e-31 138.7 236 35.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-30 137.9 237 36.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.5e-26 123.6 113 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.2e-25 119.0 220 34.5
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.8e-24 117.5 67 85.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.9e-22 110.2 118 44.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.9e-19 99.8 214 29.9
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 6.6e-19 99.0 185 33.5
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-17 94.0 116 42.2
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.2e-17 92.4 71 57.7
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.8e-16 90.9 184 31.5
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.2e-15 88.2 199 33.2
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.9e-14 83.6 86 47.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 7.1e-13 79.0 65 52.3
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-11 72.8 70 47.1
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 5.1e-11 72.8 70 58.6
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.6e-09 66.6 65 53.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.4e-08 64.7 47 61.7
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.8e-08 64.3 63 49.2
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.0e-07 60.8 57 49.1
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.6e-07 60.5 58 51.7


User provided reference genes

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