Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 4.0e-168 594.7 308 100.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.8e-158 561.2 297 98.3
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 4.9e-126 454.9 308 81.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.8e-81 306.2 198 85.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.1e-80 302.4 308 59.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-64 251.1 319 51.7
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.8e-54 216.1 310 47.4
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.3e-48 195.7 311 45.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 9.1e-48 194.9 310 43.9
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 9.4e-45 184.9 314 43.0
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.0e-43 179.9 310 42.6
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.2e-33 147.1 128 68.0
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.3e-27 127.1 317 36.0
BcaB06g26463 Brassica carinata HOM05D005115 ORTHO05D005703 2.7e-23 113.6 93 67.7
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.3e-22 110.5 126 53.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.5e-21 107.1 126 51.6
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.5e-21 107.1 126 51.6
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 9.5e-21 105.1 145 49.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.5e-21 105.1 129 50.4
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 9.5e-21 105.1 126 53.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 6.2e-20 102.4 128 51.6
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 6.2e-20 102.4 145 47.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.1e-19 101.7 128 52.3
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.1e-19 101.7 129 54.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.0e-19 99.8 146 47.9
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.0e-18 97.4 120 55.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 8.3e-17 92.0 112 56.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.1e-16 89.7 121 48.8
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 9.2e-16 88.6 112 55.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 9.2e-16 88.6 121 48.8
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.2e-15 88.2 316 33.5
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.6e-15 87.8 113 51.3
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-15 87.4 121 49.6
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-15 87.4 121 49.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 6.0e-15 85.9 121 48.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.0e-15 85.9 120 47.5
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 7.8e-15 85.5 308 32.8
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.8e-15 85.5 121 46.3
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.0e-14 85.1 120 46.7
CARHR231330 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.0e-14 85.1 121 47.1
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.0e-14 85.1 118 46.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.7e-14 84.3 116 49.1
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.9e-14 83.2 114 50.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.9e-14 83.2 121 46.3
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.9e-14 83.2 120 45.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 6.6e-14 82.4 120 47.5
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 6.6e-14 82.4 120 46.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 8.6e-14 82.0 113 46.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.6e-14 82.0 113 46.9
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.5e-13 81.3 120 44.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.5e-13 81.3 120 45.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.9e-13 80.9 120 43.3
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 2.5e-13 80.5 120 43.3
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.3e-13 80.1 120 46.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.3e-13 80.1 120 43.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.3e-13 80.1 120 48.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.3e-13 80.1 127 42.5
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.3e-13 80.1 121 45.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 5.6e-13 79.3 120 45.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 5.6e-13 79.3 104 51.0
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 7.3e-13 79.0 120 44.2
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.3e-13 79.0 113 46.0
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.3e-13 79.0 113 46.0
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.3e-13 79.0 113 44.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 7.3e-13 79.0 120 43.3
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.3e-13 79.0 121 46.3
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 9.5e-13 78.6 120 44.2
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.5e-13 78.6 122 45.9
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 9.5e-13 78.6 104 51.9
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-12 78.2 168 41.1
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.2e-12 78.2 120 45.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.6e-12 77.8 115 46.1
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.6e-12 77.8 122 45.9
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.1e-12 77.4 127 41.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.1e-12 77.4 122 48.4
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.1e-12 77.4 120 44.2
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.1e-12 77.4 138 42.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.8e-12 77.0 121 47.1
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.8e-12 77.0 121 47.1
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.8e-12 77.0 120 42.5
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.8e-12 77.0 121 43.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-12 77.0 141 44.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-12 77.0 141 44.7
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.6e-12 76.6 131 42.7
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 4.7e-12 76.3 121 44.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 4.7e-12 76.3 153 36.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 8.1e-12 75.5 120 43.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.1e-12 75.5 120 44.2
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.1e-12 75.5 120 44.2
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-11 75.1 122 44.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.4e-11 74.7 108 50.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.4e-11 74.7 112 49.1
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.8e-11 74.3 120 41.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.3e-11 73.9 127 40.9
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.3e-11 73.9 114 43.9
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.1e-11 73.6 99 46.5
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 4.0e-11 73.2 99 47.5
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 4.0e-11 73.2 115 47.8
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.0e-11 73.2 120 44.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.8e-11 72.4 120 41.7
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.8e-11 72.4 120 41.7
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 8.9e-11 72.0 124 41.9
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-10 71.6 112 42.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.2e-10 71.6 106 48.1
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.2e-10 71.6 120 43.3
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.5e-10 71.2 120 45.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 2.0e-10 70.9 115 47.0
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.0e-10 70.9 122 44.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.6e-10 70.5 118 46.6
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.8e-10 69.3 131 40.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 7.5e-10 68.9 120 42.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.3e-09 68.2 121 43.0
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.2e-09 67.4 121 42.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 3.7e-09 66.6 104 42.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.1e-08 65.1 151 34.4
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.4e-08 64.7 98 43.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.9e-08 64.3 118 40.7
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.2e-08 63.5 138 38.4
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 3.2e-08 63.5 123 41.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 4.1e-08 63.2 330 31.5
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.4e-08 62.8 121 39.7
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.4e-08 62.8 121 41.3
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 7.1e-08 62.4 121 38.8
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 7.1e-08 62.4 148 37.2
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 9.2e-08 62.0 120 37.5
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.2e-07 61.6 107 41.1
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.2e-07 61.6 112 40.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.1e-07 60.8 96 43.8
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 4.6e-07 59.7 102 40.2
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 7.8e-07 58.9 142 38.7
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 7.8e-07 58.9 147 32.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.0e-06 58.5 58 56.9
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 6.6e-06 55.8 57 56.1


User provided reference genes

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