Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p17460 Brassica napus HOM05D002212 ORTHO05D002229 4.6e-92 341.3 181 100.0
BolC1t01686H Brassica oleracea HOM05D002212 ORTHO05D002229 6.9e-80 300.8 182 90.1
C03p51820 Brassica napus HOM05D002212 ORTHO05D002229 8.5e-78 293.9 181 88.4
BcaC09g51055 Brassica carinata HOM05D002212 ORTHO05D002229 4.8e-73 278.1 199 78.9
BcaC01g02917 Brassica carinata HOM05D002212 ORTHO05D002229 1.2e-31 140.6 150 62.0
C03p58410 Brassica napus HOM05D002212 ORTHO05D002229 1.2e-31 140.6 150 62.0
BolC3t18099H Brassica oleracea HOM05D002212 ORTHO05D002229 1.5e-29 133.7 167 55.7
BraA06t26329Z Brassica rapa HOM05D002212 ORTHO05D002229 3.3e-29 132.5 151 58.3
A06p33960 Brassica napus HOM05D002212 ORTHO05D002229 7.3e-29 131.3 151 58.3
BcaB08g34734 Brassica carinata HOM05D002212 ORTHO05D002229 2.3e-27 126.3 153 56.9
C09p13390 Brassica napus HOM05D002212 ORTHO05D002229 2.3e-27 126.3 157 52.9
BcaC04g22973 Brassica carinata HOM05D002212 ORTHO05D002229 4.4e-26 122.1 157 52.2
BolC9t54230H Brassica oleracea HOM05D002212 ORTHO05D002229 4.4e-26 122.1 157 52.2
BcaB07g31729 Brassica carinata HOM05D002212 ORTHO05D002229 2.1e-23 113.2 136 55.1
BraA09t36776Z Brassica rapa HOM05D002212 ORTHO05D002229 3.9e-22 109.0 133 53.4
Sp3g30780 Schrenkiella parvula HOM05D002212 ORTHO05D002229 6.6e-22 108.2 145 51.0
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 8.6e-22 107.8 113 60.2
Thhalv10022639m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 8.6e-22 107.8 154 49.4
THA.LOC104819706 Tarenaya hassleriana HOM05D002212 ORTHO05D002229 1.8e-19 100.1 141 47.5
CARHR107610 Cardamine hirsuta HOM05D002212 ORTHO05D002229 5.2e-19 98.6 134 50.0
BcaC05g27361 Brassica carinata HOM05D002212 ORTHO05D002229 5.8e-18 95.1 106 56.6
A09p11370 Brassica napus HOM05D002212 ORTHO05D002229 5.8e-18 95.1 133 50.4
Thhalv10024838m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 3.7e-17 92.4 138 48.6
AL3G50310 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 1.9e-16 90.1 133 46.6
AL7G15700 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 1.9e-16 90.1 134 47.0
Carub.0003s3148 Capsella rubella HOM05D002212 ORTHO05D002229 3.2e-16 89.4 135 44.4
AT4G35470 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 9.2e-16 87.8 139 45.3
Aa31LG6G12440 Aethionema arabicum HOM05D002212 ORTHO05D002229 3.5e-15 85.9 129 43.4
Sp7g33240 Schrenkiella parvula HOM05D002212 ORTHO05D002229 3.5e-15 85.9 141 44.7
AT2G17440 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 6.0e-15 85.1 133 45.9
Carub.0007s0486 Capsella rubella HOM05D002212 ORTHO05D002229 2.3e-14 83.2 140 42.1
Aa31LG8G14750 Aethionema arabicum HOM05D002212 ORTHO05D002229 6.6e-14 81.6 125 41.6
BcaNung03630 Brassica carinata HOM05D002212 ORTHO05D002229 6.6e-14 81.6 134 41.8
Cfa007109 Carpinus fangiana HOM05D002212 ORTHO05D002229 8.6e-14 81.3 143 42.0
Haze_03639 Corylus avellana HOM05D002212 ORTHO05D002229 8.6e-14 81.3 140 40.7
A03p63580 Brassica napus HOM05D002212 ORTHO05D002229 1.9e-13 80.1 139 41.0
BraA03t15428Z Brassica rapa HOM05D002212 ORTHO05D002229 1.9e-13 80.1 139 41.0
A01p03120 Brassica napus HOM05D002212 ORTHO05D002229 2.5e-13 79.7 131 42.0
PGR119G1495 Punica granatum HOM05D002212 ORTHO05D002229 2.5e-13 79.7 157 38.9
BraA01t00296Z Brassica rapa HOM05D002212 ORTHO05D002229 3.3e-13 79.3 131 42.0
CiPaw.08G182500 Carya illinoinensis HOM05D002212 ORTHO05D002229 4.3e-13 79.0 130 40.0
Gohir.A07G172000 Gossypium hirsutum HOM05D002212 ORTHO05D002229 5.6e-13 78.6 103 48.5
Gorai.001G200100 Gossypium raimondii HOM05D002212 ORTHO05D002229 5.6e-13 78.6 103 48.5
QL06p053326 Quercus lobata HOM05D002212 ORTHO05D002229 5.6e-13 78.6 141 37.6
Gohir.D07G178900 Gossypium hirsutum HOM05D002212 ORTHO05D002229 7.3e-13 78.2 103 48.5
C01p03470 Brassica napus HOM05D002212 ORTHO05D002229 9.6e-13 77.8 125 41.6
BolC1t00334H Brassica oleracea HOM05D002212 ORTHO05D002229 9.6e-13 77.8 125 41.6
Manes.02G116100 Manihot esculenta HOM05D002212 ORTHO05D002229 9.6e-13 77.8 150 38.0
Thecc.01G002300 Theobroma cacao HOM05D002212 ORTHO05D002229 9.6e-13 77.8 87 51.7
Lj2C504T11 Lonicera japonica HOM05D002212 ORTHO05D002229 2.8e-12 76.3 152 36.8
VMungo1215G0534 Vigna mungo HOM05D002212 ORTHO05D002229 2.8e-12 76.3 91 47.3
Lj2g0008426 Lotus japonicus HOM05D002212 ORTHO05D002229 3.6e-12 75.9 111 42.3
Nn5g31041 Nelumbo nucifera HOM05D002212 ORTHO05D002229 3.6e-12 75.9 139 38.8
BcaNung02393 Brassica carinata HOM05D002212 ORTHO05D002229 4.7e-12 75.5 141 39.7
C07p61160 Brassica napus HOM05D002212 ORTHO05D002229 4.7e-12 75.5 141 39.7
Glyma.01G157000 Glycine max HOM05D002212 ORTHO05D002229 4.7e-12 75.5 117 41.9
Rhsim10G0191600 Rhododendron simsii HOM05D002212 ORTHO05D002229 4.7e-12 75.5 150 36.7
DCAR_014300 Daucus carota HOM05D002212 ORTHO05D002229 6.2e-12 75.1 156 39.7
TAR625G1428 Trochodendron aralioides HOM05D002212 ORTHO05D002229 6.2e-12 75.1 146 39.0
Phvul.002G118400 Phaseolus vulgaris HOM05D002212 ORTHO05D002229 8.1e-12 74.7 117 43.6
Glyma.09G196300 Glycine max HOM05D002212 ORTHO05D002229 1.1e-11 74.3 128 39.8
Lalb_Chr09g0324841 Lupinus albus HOM05D002212 ORTHO05D002229 1.1e-11 74.3 159 35.2
Medtr5g024780 Medicago truncatula HOM05D002212 ORTHO05D002229 1.1e-11 74.3 89 46.1
Nitab4.5_0003096g0030 Nicotiana tabacum HOM05D002212 ORTHO05D002229 1.1e-11 74.3 142 36.6
Eucgr.I02205 Eucalyptus grandis HOM05D002212 ORTHO05D002229 1.4e-11 73.9 149 37.6
Prupe.7G186300 Prunus persica HOM05D002212 ORTHO05D002229 1.4e-11 73.9 109 41.3
BolC7t46540H Brassica oleracea HOM05D002212 ORTHO05D002229 1.8e-11 73.6 141 39.0
Ciclev10025268m.g Citrus clementina HOM05D002212 ORTHO05D002229 1.8e-11 73.6 151 37.1
CiPaw.07G000600 Carya illinoinensis HOM05D002212 ORTHO05D002229 2.4e-11 73.2 133 38.3
Duzib147G0477 Durio zibethinus HOM05D002212 ORTHO05D002229 3.1e-11 72.8 106 45.3
Glyma.11G087900 Glycine max HOM05D002212 ORTHO05D002229 3.1e-11 72.8 149 38.9
MBI04_g33968_MAGBIO Magnolia biondii HOM05D002212 ORTHO05D002229 3.1e-11 72.8 145 35.9
arahy.Tifrunner.gnm1.ann1.N938ZP Arachis hypogaea HOM05D002212 ORTHO05D002229 4.0e-11 72.4 95 45.3
arahy.Tifrunner.gnm1.ann1.SZ6KWI Arachis hypogaea HOM05D002212 ORTHO05D002229 4.0e-11 72.4 95 45.3
vmacro20609 Vaccinium macrocarpon HOM05D002212 ORTHO05D002229 4.0e-11 72.4 102 46.1
MSTRG.15605 Avicennia marina HOM05D002212 ORTHO05D002229 6.8e-11 71.6 91 46.2
Lalb_Chr16g0380181 Lupinus albus HOM05D002212 ORTHO05D002229 6.8e-11 71.6 155 35.5
Manes.01G157200 Manihot esculenta HOM05D002212 ORTHO05D002229 6.8e-11 71.6 154 33.8
HPP92_022741 Vanilla planifolia HOM05D002212 ORTHO05D002229 6.8e-11 71.6 152 31.6
Ca_24996_v3 Cicer arietinum L. HOM05D002212 ORTHO05D002229 8.9e-11 71.2 95 41.1
Cc07_g12150 Coffea canephora HOM05D002212 ORTHO05D002229 8.9e-11 71.2 107 41.1
MD15G1228200 Malus domestica HOM05D002212 ORTHO05D002229 8.9e-11 71.2 107 43.9
Psat2g147600 Pisum sativum HOM05D002212 ORTHO05D002229 8.9e-11 71.2 91 42.9
TAR381G1220 Trochodendron aralioides HOM05D002212 ORTHO05D002229 8.9e-11 71.2 111 42.3
Glyma.16G112600 Glycine max HOM05D002212 ORTHO05D002229 1.2e-10 70.9 128 39.8
Lalb_Chr05g0214951 Lupinus albus HOM05D002212 ORTHO05D002229 1.2e-10 70.9 173 33.5
Nitab4.5_0000467g0120 Nicotiana tabacum HOM05D002212 ORTHO05D002229 1.2e-10 70.9 96 42.7
PSO675G3911 Papaver somniferum HOM05D002212 ORTHO05D002229 1.2e-10 70.9 91 46.2
CSS0027494 Camellia sinensis var. sinensis HOM05D002212 ORTHO05D002229 1.5e-10 70.5 153 34.6
Dinv28298 Davidia involucrata HOM05D002212 ORTHO05D002229 1.5e-10 70.5 152 33.6
Lalb_Chr16g0391701 Lupinus albus HOM05D002212 ORTHO05D002229 1.5e-10 70.5 95 43.2
Oeu043404.1 Olea europaea HOM05D002212 ORTHO05D002229 1.5e-10 70.5 136 35.3
SalBow3G1404 Salvia bowleyana HOM05D002212 ORTHO05D002229 1.5e-10 70.5 149 35.6
SalBow3G2770 Salvia bowleyana HOM05D002212 ORTHO05D002229 1.5e-10 70.5 149 35.6
Atru.chr3.53 Acer truncatum HOM05D002212 ORTHO05D002229 2.6e-10 69.7 91 42.9
AUR62016576 Chenopodium quinoa HOM05D002212 ORTHO05D002229 2.6e-10 69.7 147 34.7
MD02G1109000 Malus domestica HOM05D002212 ORTHO05D002229 2.6e-10 69.7 134 38.1
EL10Ac6g15031 Beta vulgaris HOM05D002212 ORTHO05D002229 4.4e-10 68.9 158 32.3
HanXRQChr09g0259051 Helianthus annuus HOM05D002212 ORTHO05D002229 4.4e-10 68.9 157 35.7
Nn6g31649 Nelumbo nucifera HOM05D002212 ORTHO05D002229 4.4e-10 68.9 124 41.1
GSVIVG01022315001 Vitis vinifera HOM05D002212 ORTHO05D002229 4.4e-10 68.9 95 43.2
Potri.007G065000 Populus trichocarpa HOM05D002212 ORTHO05D002229 5.8e-10 68.6 180 28.9
Sabra05G0081000 Salix brachista HOM05D002212 ORTHO05D002229 5.8e-10 68.6 181 30.9
DCAR_002995 Daucus carota HOM05D002212 ORTHO05D002229 7.6e-10 68.2 91 45.1
Hma1.2p1_0631F.1_g192310 Hydrangea macrophylla HOM05D002212 ORTHO05D002229 7.6e-10 68.2 148 37.2
Potri.005G098600 Populus trichocarpa HOM05D002212 ORTHO05D002229 9.9e-10 67.8 116 37.1
RcHm_v2.0_Chr2g0096861 Rosa chinensis HOM05D002212 ORTHO05D002229 1.3e-09 67.4 132 37.1
TPR.G33791 Trifolium pratense HOM05D002212 ORTHO05D002229 1.3e-09 67.4 157 34.4
Aqoxy6G01546 Aquilegia oxysepala HOM05D002212 ORTHO05D002229 1.7e-09 67.0 149 34.9
Dinv40213 Davidia involucrata HOM05D002212 ORTHO05D002229 1.7e-09 67.0 157 33.8
Oeu045750.2 Olea europaea HOM05D002212 ORTHO05D002229 1.7e-09 67.0 135 35.6
PGSC0003DMG400023198 Solanum tuberosum HOM05D002212 ORTHO05D002229 1.7e-09 67.0 148 35.1
CAN.G328.2 Capsicum annuum HOM05D002212 ORTHO05D002229 2.9e-09 66.2 141 37.6
DCAR_016692 Daucus carota HOM05D002212 ORTHO05D002229 2.9e-09 66.2 100 40.0
AUR62003723 Chenopodium quinoa HOM05D002212 ORTHO05D002229 4.9e-09 65.5 144 33.3
Solyc02g038800.1 Solanum lycopersicum HOM05D002212 ORTHO05D002229 4.9e-09 65.5 148 34.5
Sopen02g012410 Solanum pennellii HOM05D002212 ORTHO05D002229 6.4e-09 65.1 146 34.2
CAN.G1428.4 Capsicum annuum HOM05D002212 ORTHO05D002229 1.1e-08 64.3 111 37.8
FAN23G2302 Fragaria x ananassa HOM05D002212 ORTHO05D002229 1.4e-08 63.9 126 37.3
Nitab4.5_0000855g0060 Nicotiana tabacum HOM05D002212 ORTHO05D002229 1.4e-08 63.9 142 33.8
HPP92_019671 Vanilla planifolia HOM05D002212 ORTHO05D002229 1.4e-08 63.9 143 34.3
MBI01_g01375_MAGBIO Magnolia biondii HOM05D002212 ORTHO05D002229 1.9e-08 63.5 163 33.7
Ah.02g123150 Amaranthus hybridus HOM05D002212 ORTHO05D002229 2.4e-08 63.2 122 37.7
SalBow5G4614 Salvia bowleyana HOM05D002212 ORTHO05D002229 2.4e-08 63.2 97 38.1
ATR0605G056 Amborella trichopoda HOM05D002212 ORTHO05D002229 3.2e-08 62.8 91 40.7
Lsat_1_v5_gn_3_68961 Lactuca sativa HOM05D002212 ORTHO05D002229 3.2e-08 62.8 98 40.8
Nitab4.5_0005203g0010 Nicotiana tabacum HOM05D002212 ORTHO05D002229 3.2e-08 62.8 151 32.5
Solyc02g082350.3 Solanum lycopersicum HOM05D002212 ORTHO05D002229 3.2e-08 62.8 157 31.8
Sopen02g027010 Solanum pennellii HOM05D002212 ORTHO05D002229 3.2e-08 62.8 159 34.0
FvH4_1g10070 Fragaria vesca HOM05D002212 ORTHO05D002229 4.2e-08 62.4 126 36.5
FAN19G0792 Fragaria x ananassa HOM05D002212 ORTHO05D002229 4.2e-08 62.4 126 36.5
FAN28G2035 Fragaria x ananassa HOM05D002212 ORTHO05D002229 4.2e-08 62.4 126 36.5
Hma1.2p1_0085F.1_g044420 Hydrangea macrophylla HOM05D002212 ORTHO05D002229 4.2e-08 62.4 107 38.3
CDE10G1347 Ceratophyllum demersum HOM05D002212 ORTHO05D002229 5.4e-08 62.0 119 36.1
Migut.H02214 Erythranthe guttata HOM05D002212 ORTHO05D002229 5.4e-08 62.0 145 31.7
PGSC0003DMG400013644 Solanum tuberosum HOM05D002212 ORTHO05D002229 5.4e-08 62.0 114 37.7
PSO541G2167 Papaver somniferum HOM05D002212 ORTHO05D002229 9.3e-08 61.2 143 34.3
Hund19686 Selenicereus undatus HOM05D002212 ORTHO05D002229 1.2e-07 60.8 144 31.2
HPP92_020545 Vanilla planifolia HOM05D002212 ORTHO05D002229 1.6e-07 60.5 131 30.5
Ah.03g142970 Amaranthus hybridus HOM05D002212 ORTHO05D002229 2.1e-07 60.1 152 28.3
Sc07g0001430 Simmondsia chinensis HOM05D002212 ORTHO05D002229 2.1e-07 60.1 143 33.6
Lsat_1_v5_gn_8_113121 Lactuca sativa HOM05D002212 ORTHO05D002229 2.7e-07 59.7 159 34.6
HanXRQChr16g0532131 Helianthus annuus HOM05D002212 ORTHO05D002229 3.5e-07 59.3 92 39.1
Hund03586 Selenicereus undatus HOM05D002212 ORTHO05D002229 3.5e-07 59.3 104 39.4
ClCG01G020970 Citrullus lanatus HOM05D002212 ORTHO05D002229 6.0e-07 58.5 107 37.4
CsaV3_6G047920 Cucumis sativus L. HOM05D002212 ORTHO05D002229 6.0e-07 58.5 115 33.9
FAN23G1053 Fragaria x ananassa HOM05D002212 ORTHO05D002229 1.3e-06 57.4 127 35.4
FAN26G0901 Fragaria x ananassa HOM05D002212 ORTHO05D002229 1.3e-06 57.4 127 35.4
MELO3C007981.2 Cucumis melo HOM05D002212 ORTHO05D002229 1.7e-06 57.0 115 33.9
Lsat_1_v5_gn_2_73601 Lactuca sativa HOM05D002212 ORTHO05D002229 1.7e-06 57.0 140 35.0
Sed0021196 Sechium edule HOM05D002212 ORTHO05D002229 1.7e-06 57.0 145 29.0
unitig_899.g14729 Utricularia gibba HOM05D002212 ORTHO05D002229 5.1e-06 55.5 107 35.5


User provided reference genes

Program Settings