Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 2.5e-68 261.9 128 100.0
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 2.5e-68 261.9 128 100.0
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 7.3e-68 260.4 128 99.2
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 1.6e-62 242.7 128 94.5
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 4.6e-62 241.1 128 93.8
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 4.6e-62 241.1 129 92.2
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 4.6e-62 241.1 129 92.2
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 6.0e-62 240.7 129 91.5
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 1.1e-55 219.9 119 92.4
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 1.1e-55 219.9 119 92.4
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 9.3e-55 216.9 119 91.6
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 7.9e-54 213.8 116 90.5
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 3.0e-53 211.8 119 88.2
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 5.1e-53 211.1 116 89.7
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 1.5e-52 209.5 116 88.8
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 5.7e-52 207.6 114 87.7
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 7.4e-52 207.2 116 87.1
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 2.8e-51 205.3 116 85.3
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 1.1e-50 203.4 116 85.3
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 5.3e-50 201.1 115 84.3
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 2.0e-49 199.1 97 99.0
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 2.9e-48 195.3 112 84.8
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 4.6e-46 188.0 99 91.9
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 2.5e-44 182.2 106 83.0
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 3.3e-44 181.8 113 80.5
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 3.3e-44 181.8 107 82.2
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 9.7e-44 180.3 105 82.9
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 9.7e-44 180.3 105 81.9
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.3e-43 179.9 107 80.4
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.3e-43 179.9 107 80.4
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.3e-43 179.9 107 80.4
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.3e-43 179.9 107 81.3
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 1.3e-43 179.9 107 81.3
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.6e-43 179.5 107 79.4
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 2.8e-43 178.7 105 80.0
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 3.7e-43 178.3 105 81.0
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 3.7e-43 178.3 106 81.1
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 3.7e-43 178.3 106 81.1
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 4.8e-43 177.9 103 84.5
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 6.3e-43 177.6 105 81.9
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 8.2e-43 177.2 108 77.8
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.1e-42 176.8 104 81.7
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 1.1e-42 176.8 105 81.0
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.4e-42 176.4 110 79.1
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.4e-42 176.4 110 79.1
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 1.4e-42 176.4 103 83.5
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.4e-42 176.4 106 80.2
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.8e-42 176.0 104 82.7
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 1.8e-42 176.0 105 80.0
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.8e-42 176.0 107 78.5
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 2.4e-42 175.6 103 83.5
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 2.4e-42 175.6 103 83.5
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.4e-42 175.6 104 80.8
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.4e-42 175.6 103 82.5
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 2.4e-42 175.6 105 80.0
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.1e-42 175.3 107 78.5
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 3.1e-42 175.3 108 80.6
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 3.1e-42 175.3 106 79.2
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 3.1e-42 175.3 104 81.7
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 4.1e-42 174.9 107 78.5
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 5.3e-42 174.5 103 82.5
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 5.3e-42 174.5 104 81.7
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 6.9e-42 174.1 103 82.5
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 6.9e-42 174.1 106 79.2
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 9.0e-42 173.7 107 76.6
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 9.0e-42 173.7 105 78.1
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.2e-41 173.3 104 79.8
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 1.2e-41 173.3 103 82.5
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 1.2e-41 173.3 103 82.5
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 1.2e-41 173.3 103 82.5
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 1.2e-41 173.3 105 79.0
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 1.2e-41 173.3 105 79.0
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 1.2e-41 173.3 105 79.0
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 1.2e-41 173.3 105 79.0
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 1.5e-41 172.9 104 78.8
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 1.5e-41 172.9 108 76.9
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 1.5e-41 172.9 108 76.9
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 2.0e-41 172.6 98 78.6
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 2.0e-41 172.6 107 77.6
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 2.0e-41 172.6 108 76.9
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 2.6e-41 172.2 106 78.3
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-41 172.2 106 78.3
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-41 172.2 106 78.3
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-41 172.2 106 78.3
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.6e-41 172.2 106 78.3
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 3.4e-41 171.8 105 81.0
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 3.4e-41 171.8 105 78.1
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 3.4e-41 171.8 105 78.1
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.5e-41 171.4 106 78.3
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 4.5e-41 171.4 106 80.2
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 4.5e-41 171.4 114 74.6
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 4.5e-41 171.4 114 74.6
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 4.5e-41 171.4 105 79.0
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 5.9e-41 171.0 105 80.0
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 5.9e-41 171.0 105 78.1
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 5.9e-41 171.0 106 77.4
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 5.9e-41 171.0 106 78.3
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 7.7e-41 170.6 106 78.3
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 7.7e-41 170.6 105 80.0
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.7e-41 170.6 106 77.4
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 1.0e-40 170.2 105 80.0
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-40 170.2 109 77.1
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 1.0e-40 170.2 106 77.4
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.0e-40 170.2 118 71.2
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.0e-40 170.2 118 71.2
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 1.0e-40 170.2 105 78.1
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.3e-40 169.9 106 77.4
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 1.3e-40 169.9 106 78.3
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 1.7e-40 169.5 105 78.1
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.7e-40 169.5 103 80.6
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 2.2e-40 169.1 105 79.0
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 2.9e-40 168.7 108 75.0
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 6.5e-40 167.5 100 82.0
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 3.2e-39 165.2 115 71.3
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 4.2e-39 164.9 105 77.1
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 9.4e-39 163.7 106 75.5
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.2e-38 163.3 97 80.4
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 2.7e-38 162.2 102 78.4
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 2.3e-37 159.1 108 75.0
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 3.9e-37 158.3 110 71.8
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 5.1e-37 157.9 112 70.5
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 6.7e-37 157.5 102 77.5
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 1.1e-36 156.8 101 76.2
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.7e-35 152.9 103 73.8
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.7e-35 151.8 95 76.8
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 1.0e-32 143.7 86 76.7
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 6.5e-32 141.0 101 71.3
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.9e-31 139.4 98 70.4
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 3.9e-29 131.7 103 62.1
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.7e-28 127.9 106 62.3
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.1e-26 122.1 71 78.9
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.1e-26 122.1 71 78.9
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.1e-26 121.7 80 70.0
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 7.0e-26 120.9 73 82.2
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-25 119.0 76 76.3
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 1.5e-23 113.2 105 59.0
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.7e-22 109.0 62 80.6
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 8.0e-22 107.5 117 53.0
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.0e-21 105.1 91 57.1
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.2e-17 93.6 59 79.7
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.0e-16 88.2 80 55.0
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-14 83.6 57 71.9
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-11 73.6 56 66.1
Atru.chr7.305 Acer truncatum HOM05D003336 ORTHO05D003807 4.8e-11 71.6 66 53.0
C03p84370 Brassica napus HOM05D000924 ORTHO05D001209 6.3e-11 71.2 52 59.6
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 2.4e-10 69.3 46 78.3
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-08 63.9 67 49.3
Atru.chr7.309 Acer truncatum HOM05D003336 ORTHO05D003807 1.3e-08 63.5 62 50.0
A08p15930 Brassica napus HOM05D000924 ORTHO05D001209 8.5e-08 60.8 60 50.0


User provided reference genes

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