Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p16790 Brassica napus HOM05D021885 ORTHO05D024379 7.4e-59 230.3 117 100.0
BolC1t01622H Brassica oleracea HOM05D021885 ORTHO05D024379 5.0e-55 217.6 117 96.6
A01p13790 Brassica napus HOM05D021885 ORTHO05D024379 7.5e-43 177.2 97 93.8
BcaC09g51119 Brassica carinata HOM05D021885 ORTHO05D024379 1.6e-29 132.9 98 77.6
BraA01t01325Z Brassica rapa HOM05D021885 ORTHO05D024379 1.9e-22 109.4 74 79.7
A07p16700 Brassica napus HOM05D000231 ORTHO05D000132 6.2e-21 104.4 88 68.2
BcaB02g09948 Brassica carinata HOM05D000231 ORTHO05D000132 1.8e-20 102.8 84 70.2
BolC7t42962H Brassica oleracea HOM05D000231 ORTHO05D000132 3.1e-20 102.1 85 69.4
BcaC06g34808 Brassica carinata HOM05D000231 ORTHO05D000132 4.0e-20 101.7 85 69.4
C07p24420 Brassica napus HOM05D000231 ORTHO05D000132 4.0e-20 101.7 85 69.4
BraA07t29393Z Brassica rapa HOM05D000231 ORTHO05D000132 8.9e-20 100.5 88 65.9
Sp2g29410 Schrenkiella parvula HOM05D000231 ORTHO05D000132 1.3e-18 96.7 85 65.9
CARHR280370 Cardamine hirsuta HOM05D000231 ORTHO05D000132 8.3e-18 94.0 85 63.5
Thhalv10004441m.g Eutrema salsugineum HOM05D000231 ORTHO05D000132 8.3e-18 94.0 85 63.5
Carub.0008s2725 Capsella rubella HOM05D000231 ORTHO05D000132 2.4e-17 92.4 85 62.4
AL8G44080 Arabidopsis lyrata HOM05D000231 ORTHO05D000132 6.6e-15 84.3 85 58.8
AT5G67260 Arabidopsis thaliana HOM05D000231 ORTHO05D000132 9.5e-14 80.5 85 56.5
Sp5g12040 Schrenkiella parvula HOM05D000231 ORTHO05D000132 2.6e-11 72.4 84 48.8
Thhalv10010471m.g Eutrema salsugineum HOM05D000231 ORTHO05D000132 9.9e-11 70.5 84 48.8
Carub.0005s1642 Capsella rubella HOM05D000231 ORTHO05D000132 2.2e-10 69.3 85 51.8
BcaB05g23184 Brassica carinata HOM05D000231 ORTHO05D000132 2.4e-09 65.9 84 48.8
AT3G50070 Arabidopsis thaliana HOM05D000231 ORTHO05D000132 3.2e-09 65.5 85 48.2
Potri.005G141900 Populus trichocarpa HOM05D000231 ORTHO05D000132 7.1e-09 64.3 53 52.8
THA.LOC104827416 Tarenaya hassleriana HOM05D000231 ORTHO05D000132 9.2e-09 63.9 53 60.4
AL5G30190 Arabidopsis lyrata HOM05D000231 ORTHO05D000132 1.6e-08 63.2 85 47.1
Aa31LG4G18460 Aethionema arabicum HOM05D000231 ORTHO05D000132 2.1e-08 62.8 52 55.8
Potri.007G048300 Populus trichocarpa HOM05D000231 ORTHO05D000132 6.0e-08 61.2 53 52.8
Manes.13G119100 Manihot esculenta HOM05D000231 ORTHO05D000132 7.8e-08 60.8 53 50.9
THA.LOC104821243 Tarenaya hassleriana HOM05D000231 ORTHO05D000132 1.0e-07 60.5 53 58.5
Sabra05G0113300 Salix brachista HOM05D000231 ORTHO05D000132 3.0e-07 58.9 53 49.1
BcaC06g33110 Brassica carinata HOM05D000231 ORTHO05D000132 1.1e-06 57.0 51 56.9
Manes.12G108100 Manihot esculenta HOM05D000231 ORTHO05D000132 1.1e-06 57.0 53 45.3
arahy.Tifrunner.gnm1.ann1.9Z0920 Arachis hypogaea HOM05D000231 ORTHO05D000132 2.5e-06 55.8 55 47.3
Gorai.003G027100 Gossypium raimondii HOM05D000231 ORTHO05D000132 2.5e-06 55.8 80 37.5
Sabra07G0043200 Salix brachista HOM05D000231 ORTHO05D000132 3.3e-06 55.5 53 47.2
CANSAT25G0814 Cannabis sativa HOM05D000231 ORTHO05D000132 7.3e-06 54.3 53 45.3
CiPaw.02G006300 Carya illinoinensis HOM05D000231 ORTHO05D000132 7.3e-06 54.3 53 47.2
Haze_15354 Corylus avellana HOM05D000231 ORTHO05D000132 7.3e-06 54.3 49 57.1
Dinv42182 Davidia involucrata HOM05D000231 ORTHO05D000132 7.3e-06 54.3 54 46.3
Gohir.A02G155200 Gossypium hirsutum HOM05D000231 ORTHO05D000132 7.3e-06 54.3 46 56.5
Gohir.D02G090300 Gossypium hirsutum HOM05D000231 ORTHO05D000132 7.3e-06 54.3 69 43.5
RcHm_v2.0_Chr6g0308791 Rosa chinensis HOM05D000231 ORTHO05D000132 7.3e-06 54.3 52 48.1
vmacro02011 Vaccinium macrocarpon HOM05D000231 ORTHO05D000132 7.3e-06 54.3 73 38.4
TAR376G1149 Trochodendron aralioides HOM05D000231 ORTHO05D000132 9.5e-06 53.9 53 47.2


User provided reference genes

Program Settings