Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 4.4e-142 508.1 279 100.0
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 2.7e-139 498.8 279 98.2
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 2.3e-138 495.7 279 97.5
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 7.1e-124 447.6 280 88.9
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 5.8e-118 427.9 280 85.4
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 5.6e-97 358.2 308 70.1
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 2.8e-88 329.3 285 66.3
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 2.9e-77 292.7 314 61.1
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 7.2e-76 288.1 306 61.4
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 9.4e-68 261.2 177 67.8
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 4.5e-54 215.7 131 80.9
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 1.0e-45 188.0 147 67.3
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 3.8e-45 186.0 188 50.0
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.5e-44 184.1 175 50.9
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 7.2e-44 181.8 173 51.4
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 1.6e-43 180.6 169 50.3
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 2.1e-43 180.3 171 50.9
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 3.6e-43 179.5 169 49.7
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 4.7e-43 179.1 127 72.4
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 4.0e-42 176.0 144 55.6
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 5.2e-42 175.6 172 51.7
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 6.8e-42 175.3 169 47.3
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 8.8e-42 174.9 172 51.2
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.2e-41 174.5 177 46.9
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.2e-41 174.5 144 55.6
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 2.0e-41 173.7 170 50.6
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 9.8e-41 171.4 134 59.0
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.7e-40 170.6 131 58.8
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 1.7e-40 170.6 172 49.4
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 1.7e-40 170.6 175 50.9
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 6.3e-40 168.7 178 48.9
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 6.3e-40 168.7 175 47.4
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 7.0e-39 165.2 170 49.4
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 9.2e-39 164.9 175 45.7
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.2e-38 164.5 175 44.0
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 1.6e-38 164.1 175 44.6
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 2.0e-38 163.7 144 50.7
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 2.7e-38 163.3 177 48.6
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 5.9e-38 162.2 175 44.0
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 5.9e-38 162.2 176 45.5
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 7.8e-38 161.8 132 56.1
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 7.8e-38 161.8 175 43.4
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 2.5e-36 156.8 168 44.6
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 4.3e-36 156.0 172 43.6
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 2.8e-35 153.3 185 41.6
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 1.4e-34 151.0 170 45.9
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 5.2e-34 149.1 176 42.0
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 2.0e-33 147.1 183 42.1
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.3e-32 144.4 180 46.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.3e-32 144.4 180 46.1
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 1.1e-31 141.4 169 41.4
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 2.7e-30 136.7 143 46.9
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 5.9e-30 135.6 180 42.8
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 7.8e-30 135.2 176 39.2
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 6.6e-29 132.1 114 53.5
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 3.3e-28 129.8 143 44.1
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 5.6e-28 129.0 175 39.4
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 7.3e-28 128.6 131 46.6
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 7.3e-28 128.6 175 41.7
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 9.5e-28 128.3 184 38.0
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 9.5e-28 128.3 145 42.8
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 9.5e-28 128.3 153 42.5
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.4e-26 124.4 175 37.1
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 6.8e-26 122.1 135 43.0
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.2e-25 121.3 135 42.2
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 2.2e-24 117.1 155 40.6
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 4.9e-24 115.9 169 35.5
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 1.1e-23 114.8 175 37.1
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 1.1e-23 114.8 113 46.9
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.4e-23 114.4 115 47.0
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 5.4e-23 112.5 273 29.3
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 7.0e-23 112.1 114 43.9
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 3.5e-22 109.8 169 39.6
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 5.6e-20 102.4 178 35.4
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 3.6e-19 99.8 131 38.2
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 8.9e-18 95.1 85 48.2
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 4.1e-15 86.3 80 48.8
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 1.0e-13 81.6 88 47.7
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 2.3e-13 80.5 125 35.2
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.5e-12 77.8 120 35.0
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 9.5e-12 75.1 112 35.7
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 4.7e-11 72.8 115 31.3
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 4.7e-11 72.8 124 31.5
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 1.1e-10 71.6 125 26.4
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.8e-10 70.9 118 31.4
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.8e-10 70.9 118 30.5
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 2.4e-10 70.5 117 34.2
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 3.1e-10 70.1 118 30.5
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 5.2e-10 69.3 134 29.9
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 2.0e-09 67.4 119 31.1
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 4.4e-09 66.2 119 28.6
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 5.8e-09 65.9 117 31.6
ATR0661G383 Amborella trichopoda HOM05D002745 ORTHO05D002945 7.6e-09 65.5 129 31.0
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 1.3e-08 64.7 118 30.5
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.3e-08 64.7 144 28.5
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.7e-08 64.3 119 28.6
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 1.7e-08 64.3 114 31.6
Potri.003G131500 Populus trichocarpa HOM05D002745 ORTHO05D002945 1.7e-08 64.3 115 31.3
Sabra03G0093800 Salix brachista HOM05D002745 ORTHO05D002945 2.2e-08 63.9 115 29.6
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 3.8e-08 63.2 59 44.1
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 3.8e-08 63.2 135 28.9
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 6.4e-08 62.4 137 27.0
RcHm_v2.0_Chr7g0231601 Rosa chinensis HOM05D002745 ORTHO05D002945 3.2e-07 60.1 105 32.4
LjContig00312_ERROPOS870357g0020900 Lotus japonicus HOM05D002745 ORTHO05D002945 5.4e-07 59.3 116 31.0
AUR62010728 Chenopodium quinoa HOM05D002745 ORTHO05D002945 7.1e-07 58.9 121 30.6
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 2.1e-06 57.4 125 27.2
LjContig00222g0027382 Lotus japonicus HOM05D002745 ORTHO05D002945 6.0e-06 55.8 119 26.9
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 6.0e-06 55.8 110 27.3
SalBow8G0983 Salvia bowleyana HOM05D002745 ORTHO05D002945 6.0e-06 55.8 134 27.6
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 7.8e-06 55.5 96 31.2


User provided reference genes

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