Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p16270 Brassica napus HOM05D013838 ORTHO05D033741 4.0e-56 221.1 104 100.0
BolC7t42215H Brassica oleracea HOM05D013838 ORTHO05D033741 3.4e-31 138.3 71 95.8
BolC5t31393H Brassica oleracea HOM05D013838 ORTHO05D033741 6.5e-30 134.0 69 95.7
BolC4t25011H Brassica oleracea HOM05D013838 ORTHO05D019961 2.2e-22 109.0 51 100.0
BcaC02g09968 Brassica carinata HOM05D013838 ORTHO05D019961 6.5e-22 107.5 50 100.0
C04p34500 Brassica napus HOM05D013838 ORTHO05D019961 6.5e-22 107.5 50 100.0
BolC9t57974H Brassica oleracea HOM05D013838 ORTHO05D019961 2.5e-21 105.5 51 98.0
BcaC06g35351 Brassica carinata HOM05D013838 ORTHO05D019961 3.2e-21 105.1 50 98.0
A03p06970 Brassica napus HOM05D013838 ORTHO05D019961 2.1e-20 102.4 51 94.1
A09p37240 Brassica napus HOM05D013838 ORTHO05D019961 2.1e-20 102.4 51 94.1
BcaC09g50107 Brassica carinata HOM05D001343 ORTHO05D002008 8.2e-17 90.5 50 84.0
A01p23240 Brassica napus HOM05D001343 ORTHO05D002008 8.2e-17 90.5 50 84.0
C01p28880 Brassica napus HOM05D001343 ORTHO05D002008 8.2e-17 90.5 50 84.0
BolC1t02820H Brassica oleracea HOM05D001343 ORTHO05D002008 8.2e-17 90.5 50 84.0
BraA01t02234Z Brassica rapa HOM05D001343 ORTHO05D002008 8.2e-17 90.5 50 84.0
BcaNung00367 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-16 89.4 50 82.0
BcaB01g01605 Brassica carinata HOM05D013838 ORTHO05D092283 4.5e-15 84.7 50 80.0
CARHR161460 Cardamine hirsuta HOM05D001343 ORTHO05D002008 5.9e-15 84.3 50 74.0
AL5G32290 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 2.2e-14 82.4 50 74.0
Sp5g10440 Schrenkiella parvula HOM05D001343 ORTHO05D002008 5.0e-14 81.3 50 74.0
AT3G51830 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 6.5e-14 80.9 50 72.0
Carub.0005s1818 Capsella rubella HOM05D001343 ORTHO05D002008 7.2e-13 77.4 51 72.5
Thhalv10010245m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 1.2e-12 76.6 50 72.0
THA.LOC104805930 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 8.8e-11 70.5 50 66.0
Aa31LG10G9060 Aethionema arabicum HOM05D001343 ORTHO05D002008 5.7e-10 67.8 50 62.0
Ciclev10011419m.g Citrus clementina HOM05D001343 ORTHO05D002008 3.7e-09 65.1 52 63.5
Cpa.g.sc11.98 Carica papaya HOM05D001343 ORTHO05D002008 6.3e-09 64.3 49 65.3
CiPaw.10G157400 Carya illinoinensis HOM05D001343 ORTHO05D002008 4.1e-08 61.6 51 58.8
Thecc.05G013700 Theobroma cacao HOM05D001343 ORTHO05D002008 4.1e-08 61.6 49 61.2
QL07p035143 Quercus lobata HOM05D001343 ORTHO05D002008 2.0e-07 59.3 42 61.9
Prupe.6G279500 Prunus persica HOM05D001343 ORTHO05D002008 2.6e-07 58.9 44 59.1
Actinidia11573 Actinidia chinensis HOM05D001343 ORTHO05D002008 3.4e-07 58.5 50 58.0
TWI74G0687 Tripterygium wilfordii HOM05D001343 ORTHO05D002008 4.5e-07 58.2 50 52.0
Cfa017190 Carpinus fangiana HOM05D001343 ORTHO05D002008 5.9e-07 57.8 47 59.6
CSS0016549 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 7.7e-07 57.4 51 52.9
CSS0021516 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 7.7e-07 57.4 51 52.9
Haze_21021 Corylus avellana HOM05D001343 ORTHO05D002008 7.7e-07 57.4 47 57.4
GSVIVG01011177001 Vitis vinifera HOM05D001343 ORTHO05D002008 1.7e-06 56.2 54 53.7
MELO3C009151.2 Cucumis melo HOM05D001343 ORTHO05D002008 2.2e-06 55.8 42 59.5
Dinv01496 Davidia involucrata HOM05D001343 ORTHO05D002008 2.2e-06 55.8 51 54.9
Duzib093G1742 Durio zibethinus HOM05D001343 ORTHO05D002008 2.2e-06 55.8 50 56.0
Lalb_Chr01g0023001 Lupinus albus HOM05D001343 ORTHO05D002008 2.2e-06 55.8 53 56.6
FvH4_6g11241 Fragaria vesca HOM05D001343 ORTHO05D002008 2.9e-06 55.5 42 61.9
FAN09G1852 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.9e-06 55.5 42 61.9
FAN14G0125 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.9e-06 55.5 42 61.9
Gohir.D04G131400 Gossypium hirsutum HOM05D001343 ORTHO05D002008 2.9e-06 55.5 49 53.1
Gorai.012G115300 Gossypium raimondii HOM05D001343 ORTHO05D002008 2.9e-06 55.5 49 53.1
Oeu038762.1 Olea europaea HOM05D001343 ORTHO05D002008 2.9e-06 55.5 44 59.1
CsaV3_3G033610 Cucumis sativus L. HOM05D001343 ORTHO05D002008 3.8e-06 55.1 42 59.5
Lalb_Chr03g0043191 Lupinus albus HOM05D001343 ORTHO05D002008 3.8e-06 55.1 53 56.6
Actinidia29090 Actinidia chinensis HOM05D001343 ORTHO05D002008 5.0e-06 54.7 50 52.0
FAN14G3930 Fragaria x ananassa HOM05D001343 ORTHO05D002008 5.0e-06 54.7 45 57.8
Gohir.A04G092200 Gossypium hirsutum HOM05D001343 ORTHO05D002008 5.0e-06 54.7 49 53.1
CANSAT35G1611 Cannabis sativa HOM05D001343 ORTHO05D002008 6.5e-06 54.3 42 61.9
Sabra16G0114300 Salix brachista HOM05D001343 ORTHO05D002008 6.5e-06 54.3 53 52.8
RcHm_v2.0_Chr3g0462761 Rosa chinensis HOM05D001343 ORTHO05D002008 8.5e-06 53.9 41 58.5


User provided reference genes

Program Settings