Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.6e-68 261.9 131 100.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 7.5e-68 260.4 131 99.2
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 7.5e-68 260.4 131 99.2
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 7.5e-68 260.4 131 99.2
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.9e-67 258.5 131 98.5
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.9e-67 258.5 131 98.5
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.1e-66 256.5 131 96.9
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.4e-66 255.4 131 96.9
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 4.1e-66 254.6 131 96.9
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.0e-65 252.3 131 96.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.5e-63 246.1 131 93.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.5e-63 245.4 132 93.9
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.2e-57 226.5 131 86.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-56 222.6 131 83.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.6e-56 220.7 131 82.4
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.1e-53 213.4 131 80.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 79.7
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.1e-53 211.8 128 80.5
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.0e-52 209.1 125 80.8
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 79.5
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.4e-52 208.4 124 79.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.1
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 7.6e-52 207.2 127 78.7
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 9.9e-52 206.8 128 78.9
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.9e-52 206.8 124 79.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 78.1
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.9e-51 205.3 128 76.6
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 78.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 77.2
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 76.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.4e-51 204.1 127 78.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 8.4e-51 203.8 128 78.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 129 78.3
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 75.8
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 75.8
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 75.8
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 78.1
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 75.6
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 75.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 5.4e-50 201.1 128 77.3
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 5.4e-50 201.1 127 76.4
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 7.1e-50 200.7 127 75.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 7.1e-50 200.7 127 76.4
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.1e-50 200.7 129 76.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 9.2e-50 200.3 127 77.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 9.2e-50 200.3 127 76.4
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 77.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 77.2
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.6e-49 199.5 126 75.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.1e-49 199.1 124 77.4
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.1e-49 199.1 128 73.4
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.7e-49 198.7 122 77.9
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.5e-49 198.4 126 77.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 78.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 76.4
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 76.4
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 75.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.0e-49 197.6 127 74.8
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 6.0e-49 197.6 127 75.6
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 7.8e-49 197.2 127 76.4
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 7.8e-49 197.2 131 73.3
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 7.8e-49 197.2 125 76.0
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.0e-48 196.8 124 75.8
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 75.6
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 75.6
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.3e-48 196.4 124 76.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.0e-48 195.3 127 75.6
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.1e-48 194.5 131 72.5
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 6.6e-48 194.1 127 75.6
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 8.6e-48 193.7 127 73.2
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 8.6e-48 193.7 127 74.8
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.6e-48 193.7 126 74.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.6e-48 193.7 126 73.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.1e-47 193.4 125 76.0
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.9e-47 192.6 131 72.5
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.9e-47 192.6 126 73.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.5e-47 192.2 127 72.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.5e-47 192.2 131 72.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.3e-47 191.8 129 73.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.3e-47 191.4 126 72.2
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.3e-47 191.4 126 72.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 5.6e-47 191.0 127 74.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 5.6e-47 191.0 127 74.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.6e-47 191.0 127 72.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 5.6e-47 191.0 126 72.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 5.6e-47 191.0 124 75.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.6e-47 190.3 127 74.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.1e-46 189.1 124 71.8
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 71.7
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.1e-46 189.1 126 73.0
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 73.2
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 76.4
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.8e-46 188.7 126 73.0
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.7e-46 188.0 127 71.7
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.1e-45 186.8 130 71.5
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.4e-45 186.4 126 73.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 4.0e-45 184.9 128 71.9
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 4.0e-45 184.9 126 71.4
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.8e-45 184.1 127 68.5
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 6.8e-45 184.1 126 70.6
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.5e-44 183.0 126 69.8
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 7.6e-44 180.6 126 69.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.3e-43 179.9 130 68.5
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.7e-43 179.5 126 69.0
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.7e-43 179.5 108 75.9
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.9e-43 178.7 103 88.3
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.1e-42 176.8 126 68.3
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 4.2e-42 174.9 128 71.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-42 174.5 105 81.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.9e-40 168.3 131 67.9
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.3e-39 165.2 169 52.7
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 4.0e-37 158.3 112 68.8
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.9e-35 151.4 91 83.5
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.9e-32 141.7 82 81.7
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 7.6e-28 127.5 82 69.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.4e-26 122.5 78 79.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.1e-25 119.4 78 74.4
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.3e-24 116.7 88 62.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 2.5e-23 112.5 108 56.5
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.8e-22 109.0 89 61.8
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.1e-22 107.5 68 76.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.9e-21 104.4 61 83.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.0e-21 104.0 68 76.5
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.4e-20 102.1 128 48.4
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.5e-19 97.8 57 84.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 8.7e-16 87.4 51 84.3
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.8e-14 82.4 82 43.9
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.2e-12 77.0 81 48.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.2e-12 77.0 116 47.4
A03p53190 Brassica napus HOM05D001081 ORTHO05D100949 1.8e-08 63.2 121 41.3
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.5e-07 60.1 40 65.0
BcaNung00816 Brassica carinata HOM05D001081 ORTHO05D007101 5.7e-07 58.2 46 76.1
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.2e-06 54.3 50 64.0


User provided reference genes

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