Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.3e-103 379.8 195 100.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.5e-35 153.7 120 72.5
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.5e-35 153.7 120 72.5
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 6.4e-31 138.3 76 92.1
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 6.4e-31 138.3 76 92.1
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 6.4e-31 138.3 76 92.1
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 6.4e-31 138.3 76 92.1
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.4e-30 137.1 76 90.8
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.4e-30 137.1 76 90.8
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 1.9e-30 136.7 76 90.8
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 3.2e-30 136.0 76 90.8
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 3.2e-30 136.0 76 89.5
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 4.2e-30 135.6 76 90.8
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 4.2e-30 135.6 76 90.8
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 2.1e-29 133.3 76 88.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 2.1e-29 133.3 76 88.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 7.8e-29 131.3 76 86.8
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 7.8e-29 131.3 76 86.8
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 7.8e-29 131.3 76 86.8
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 7.8e-29 131.3 76 86.8
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 7.8e-29 131.3 76 86.8
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.3e-28 130.6 76 86.8
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 1.3e-28 130.6 76 86.8
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 2.3e-28 129.8 76 85.5
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 3.0e-28 129.4 76 85.5
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.0e-28 129.4 76 85.5
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 3.0e-28 129.4 76 85.5
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 3.9e-28 129.0 76 84.2
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 5.1e-28 128.6 76 82.9
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 5.1e-28 128.6 76 82.9
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 6.6e-28 128.3 82 79.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 6.6e-28 128.3 75 85.3
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 6.6e-28 128.3 76 85.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 6.6e-28 128.3 76 85.5
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 8.7e-28 127.9 76 84.2
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.9e-27 126.7 76 82.9
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 2.5e-27 126.3 76 84.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 2.5e-27 126.3 76 84.2
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 3.3e-27 125.9 76 84.2
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 81.6
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 81.6
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 81.6
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 82.9
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 81.6
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 4.3e-27 125.6 76 84.2
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 82.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 82.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 82.9
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 82.9
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 82.9
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 80.3
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 5.6e-27 125.2 76 81.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 7.3e-27 124.8 69 87.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 7.3e-27 124.8 76 82.9
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 7.3e-27 124.8 76 81.6
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 9.6e-27 124.4 82 79.3
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 9.6e-27 124.4 76 82.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 1.3e-26 124.0 76 82.9
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.3e-26 124.0 75 82.7
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.6e-26 123.6 76 81.6
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 2.1e-26 123.2 82 78.0
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 2.1e-26 123.2 76 78.9
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.8e-26 122.9 75 82.7
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.8e-26 122.9 75 82.7
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 2.8e-26 122.9 75 81.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 2.8e-26 122.9 76 81.6
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 3.6e-26 122.5 76 82.9
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 3.6e-26 122.5 76 81.6
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 3.6e-26 122.5 76 77.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 4.8e-26 122.1 75 81.3
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 4.8e-26 122.1 76 81.6
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 6.2e-26 121.7 76 80.3
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 6.2e-26 121.7 76 80.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 6.2e-26 121.7 76 81.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 8.1e-26 121.3 75 80.0
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 8.1e-26 121.3 76 78.9
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 8.1e-26 121.3 76 80.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 1.1e-25 120.9 76 80.3
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 1.1e-25 120.9 83 77.1
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-25 120.6 70 82.9
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-25 120.6 76 78.9
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 1.4e-25 120.6 76 80.3
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 1.4e-25 120.6 76 80.3
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 1.8e-25 120.2 76 81.6
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.4e-25 119.8 76 80.3
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 3.1e-25 119.4 76 78.9
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.0e-25 119.0 82 76.8
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 4.0e-25 119.0 76 80.3
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 5.3e-25 118.6 77 76.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 9.0e-25 117.9 76 80.3
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 9.0e-25 117.9 76 80.3
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 1.2e-24 117.5 76 76.3
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 1.5e-24 117.1 76 77.6
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 5.8e-24 115.2 75 77.3
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 1.7e-23 113.6 76 78.9
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 1.7e-23 113.6 105 61.9
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.7e-23 113.6 76 76.3
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 3.8e-23 112.5 82 70.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 1.4e-22 110.5 81 75.3
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 1.4e-22 110.5 81 75.3
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.4e-22 109.8 97 62.9
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 9.3e-22 107.8 70 75.7
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.6e-21 107.1 73 82.2
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 8.7e-20 101.3 55 87.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 1.1e-19 100.9 53 88.7
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.5e-19 100.5 54 92.6
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 5.6e-19 98.6 71 66.2
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 1.1e-17 94.4 56 89.3
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-16 90.5 69 58.0
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-16 90.5 69 58.0
BolC1t01300H Brassica oleracea HOM05D000313 ORTHO05D000065 3.8e-15 85.9 64 73.4
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 3.8e-15 85.9 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 4.9e-15 85.5 70 57.1
BolC4t27110H Brassica oleracea HOM05D000313 ORTHO05D000065 1.1e-14 84.3 64 71.9
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 2.7e-13 79.7 74 55.4
BraA05t21748Z Brassica rapa HOM05D000313 ORTHO05D000065 6.0e-13 78.6 59 67.8
C07p50350 Brassica napus HOM05D000313 ORTHO05D000065 1.0e-12 77.8 63 68.3
BolC5t31313H Brassica oleracea HOM05D000313 ORTHO05D000065 1.8e-12 77.0 59 69.5
BolC7t45455H Brassica oleracea HOM05D000313 ORTHO05D000065 5.1e-12 75.5 58 67.2
C03p67830 Brassica napus HOM05D000313 ORTHO05D000065 6.7e-12 75.1 54 68.5
BolSC21t60251H Brassica oleracea HOM05D000313 ORTHO05D000065 6.7e-12 75.1 54 68.5
C07p02650 Brassica napus HOM05D000313 ORTHO05D000065 1.5e-11 73.9 48 77.1
C08p01650 Brassica napus HOM05D000313 ORTHO05D000065 1.9e-11 73.6 51 70.6
BolC6t36453H Brassica oleracea HOM05D000313 ORTHO05D000065 1.9e-11 73.6 57 71.9
BolC6t36465H Brassica oleracea HOM05D000313 ORTHO05D000065 1.9e-11 73.6 57 71.9
BolC8t46968H Brassica oleracea HOM05D000313 ORTHO05D000065 1.9e-11 73.6 51 70.6
BolC5t31705H Brassica oleracea HOM05D000313 ORTHO05D000065 2.5e-11 73.2 57 68.4
C01p21550 Brassica napus HOM05D000313 ORTHO05D000065 3.3e-11 72.8 60 61.7
BolC1t02075H Brassica oleracea HOM05D000313 ORTHO05D000065 3.3e-11 72.8 60 61.7
BolC7t40664H Brassica oleracea HOM05D000313 ORTHO05D000065 3.3e-11 72.8 48 75.0
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 3.3e-11 72.8 62 62.9
C06p14790 Brassica napus HOM05D000305 ORTHO05D000065 5.6e-11 72.0 48 75.0
BolC6t36457H Brassica oleracea HOM05D000313 ORTHO05D000065 5.6e-11 72.0 57 70.2
BolC6t36461H Brassica oleracea HOM05D000313 ORTHO05D000065 5.6e-11 72.0 57 70.2
BolC6t36657H Brassica oleracea HOM05D000305 ORTHO05D000065 5.6e-11 72.0 48 75.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 5.6e-11 72.0 76 56.6
BolC2t08209H Brassica oleracea HOM05D000313 ORTHO05D000065 7.4e-11 71.6 49 75.5
BolC3t15033H Brassica oleracea HOM05D000313 ORTHO05D017699 1.3e-10 70.9 54 72.2
BcaB01g04686 Brassica carinata HOM05D000313 ORTHO05D000065 2.1e-10 70.1 69 53.6
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 3.7e-10 69.3 51 66.7
C08p01640 Brassica napus HOM05D000313 ORTHO05D000065 6.2e-10 68.6 51 66.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 6.2e-10 68.6 75 44.0
BolSC21t60252H Brassica oleracea HOM05D000313 ORTHO05D000065 8.2e-10 68.2 125 40.0
BolC8t46967H Brassica oleracea HOM05D000313 ORTHO05D000065 1.1e-09 67.8 51 66.7
C03p67840 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-09 67.4 125 40.0
Carub.0007s3022 Capsella rubella HOM05D000313 ORTHO05D000065 1.8e-09 67.0 51 62.7
BcaB05g24149 Brassica carinata HOM05D000313 ORTHO05D000065 2.4e-09 66.6 50 60.0
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-09 66.6 52 59.6
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-08 64.3 50 62.0
C05p00200 Brassica napus HOM05D000313 ORTHO05D000065 1.5e-08 63.9 49 63.3
C06p47470 Brassica napus HOM05D000313 ORTHO05D000065 1.5e-08 63.9 49 63.3
C07p05180 Brassica napus HOM05D000313 ORTHO05D000065 1.5e-08 63.9 49 63.3
BolC6t37005H Brassica oleracea HOM05D000313 ORTHO05D000065 1.5e-08 63.9 49 63.3
BraA08t32937Z Brassica rapa HOM05D000313 ORTHO05D000065 1.5e-08 63.9 49 63.3
BraA09t38529Z Brassica rapa HOM05D000313 ORTHO05D000065 1.5e-08 63.9 56 62.5
Thhalv10000462m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 1.5e-08 63.9 55 52.7
Thhalv10005358m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 1.5e-08 63.9 55 52.7
Thhalv10009766m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 1.5e-08 63.9 55 52.7
BolC2t12102H Brassica oleracea HOM05D000313 ORTHO05D017699 2.6e-08 63.2 46 65.2
BolC1t02310H Brassica oleracea HOM05D000313 ORTHO05D000065 3.4e-08 62.8 64 51.6
BcaB05g24332 Brassica carinata HOM05D000313 ORTHO05D000065 4.5e-08 62.4 51 60.8
AT1G14800 Arabidopsis thaliana HOM05D000313 ORTHO05D000065 5.8e-08 62.0 51 54.9
AL1G39460 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 7.6e-08 61.6 51 54.9
AL6G43140 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 7.6e-08 61.6 51 54.9
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 7.6e-08 61.6 51 52.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 7.6e-08 61.6 51 52.9
BraA07t27926Z Brassica rapa HOM05D000313 ORTHO05D017699 2.2e-07 60.1 51 56.9
BolC4t26899H Brassica oleracea HOM05D000313 ORTHO05D000065 2.9e-07 59.7 50 62.0
BraA09t40035Z Brassica rapa HOM05D000313 ORTHO05D000065 2.9e-07 59.7 50 62.0
BolC5t31292H Brassica oleracea HOM05D000313 ORTHO05D000065 3.8e-07 59.3 44 70.5
BolC7t44193H Brassica oleracea HOM05D000313 ORTHO05D017699 3.8e-07 59.3 54 61.1
BraA05t19470Z Brassica rapa HOM05D000313 ORTHO05D000065 3.8e-07 59.3 56 51.8
C05p25650 Brassica napus HOM05D000313 ORTHO05D000065 4.9e-07 58.9 44 72.7
C06p26820 Brassica napus HOM05D000313 ORTHO05D000065 4.9e-07 58.9 151 35.1
BcaC08g45073 Brassica carinata HOM05D000313 ORTHO05D000065 6.5e-07 58.5 127 38.6
BolC2t10493H Brassica oleracea HOM05D000313 ORTHO05D000065 6.5e-07 58.5 54 59.3
C03p74100 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-06 57.4 54 59.3
BolC2t09249H Brassica oleracea HOM05D000313 ORTHO05D033824 1.9e-06 57.0 43 72.1
C03p73900 Brassica napus HOM05D000313 ORTHO05D000065 2.5e-06 56.6 54 59.3
BolC7t43481H Brassica oleracea HOM05D000305 ORTHO05D000065 2.5e-06 56.6 107 39.3
BolC9t58892H Brassica oleracea HOM05D000313 ORTHO05D000065 4.2e-06 55.8 49 55.1
BcaB06g27508 Brassica carinata HOM05D000313 ORTHO05D000065 5.5e-06 55.5 51 56.9
BolC2t09302H Brassica oleracea HOM05D000313 ORTHO05D000065 5.5e-06 55.5 57 54.4
BolC4t24845H Brassica oleracea HOM05D000305 ORTHO05D000065 7.1e-06 55.1 107 39.3
BolC5t30814H Brassica oleracea HOM05D000096 ORTHO05D042145 9.3e-06 54.7 44 59.1
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 9.3e-06 54.7 40 70.0


User provided reference genes

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