Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 2561.6 1362 100.0
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 2499.9 1362 98.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 2453.7 1380 95.8
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 2248.0 1372 88.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 2226.4 1390 87.2
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 2187.9 1367 86.2
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 2024.6 1366 80.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1952.2 1367 78.3
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1924.8 1365 77.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1815.4 1364 74.9
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1745.7 1369 70.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 0.0e+00 1680.2 1204 77.0
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 0.0e+00 1583.5 1418 65.0
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1483.0 1480 59.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1187.2 1482 50.1
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1176.8 1456 50.9
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1169.5 1404 48.6
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1162.1 1568 46.9
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1150.6 1546 46.2
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1149.8 1416 49.1
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1149.4 1548 46.2
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1361 51.6
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1145.2 1379 49.6
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1144.8 1440 47.5
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1138.6 1428 49.2
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1133.6 1475 48.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1128.6 1563 46.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1125.5 1406 50.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1121.3 1576 45.1
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1118.2 1369 49.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1112.4 1369 49.6
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1098.6 1475 47.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1091.6 1585 44.7
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1091.3 1421 49.8
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1089.3 1425 48.8
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1088.2 1444 47.0
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1087.0 1447 48.9
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1079.7 1422 48.0
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1078.5 1527 44.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 9.3e-312 1073.9 1432 46.9
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 2.3e-308 1062.8 1393 47.4
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 5.6e-307 1058.1 1422 48.2
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 3.6e-306 1055.4 1429 46.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 4.7e-306 1055.0 1476 45.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 6.2e-306 1054.7 1499 44.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.0e-304 1049.7 1409 46.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 9.9e-304 1047.3 1411 46.4
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 1.7e-303 1046.6 1536 43.8
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1475 46.0
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 3.7e-303 1045.4 1396 45.4
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 3.2e-302 1042.3 1533 43.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 4.1e-302 1042.0 1444 46.1
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 3.5e-301 1038.9 1365 47.5
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 1.6e-298 1030.0 1585 42.6
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 5.2e-297 1025.0 1410 46.1
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 6.8e-297 1024.6 1416 46.1
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 1408 47.2
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.6e-293 1013.4 1411 46.8
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 1.0e-292 1010.7 1575 41.9
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 7.3e-291 1004.6 1557 42.5
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 7.3e-291 1004.6 1397 44.9
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 7.3e-291 1004.6 1465 43.4
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 1.2e-290 1003.8 1509 43.8
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.2e-290 1003.8 1579 43.4
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 6.2e-290 1001.5 1528 44.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.4e-289 1000.3 1537 43.5
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 9.0e-289 997.7 1541 43.2
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 1.7e-287 993.4 1539 42.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.6e-283 977.6 1824 38.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 1.8e-281 973.4 1363 46.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 6.9e-281 971.5 1621 40.5
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 7.6e-280 968.0 1462 43.7
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.8e-276 956.8 1385 45.3
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 5.6e-275 951.8 1586 41.1
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.9e-271 938.7 1503 43.4
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.0e-268 929.5 963 54.7
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.3e-260 904.0 1402 43.1
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.4e-257 893.3 1367 42.6
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.7e-256 888.3 1364 43.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.7e-256 888.3 1395 44.6
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.7e-256 888.3 993 52.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.2e-255 886.7 1362 43.5
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 4.6e-253 879.0 1535 39.3
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.0e-251 873.6 1491 42.3
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.5e-240 835.9 790 58.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.7e-239 833.9 1423 41.3
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 3.3e-235 819.7 1017 47.8
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.4e-225 787.7 1416 40.5
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 2.2e-218 763.8 1371 40.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.3e-204 717.2 1323 39.1
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-199 701.4 1297 39.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.1e-196 691.8 826 48.7
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.3e-190 669.8 1371 34.9
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.0e-187 661.0 2382 27.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 3.6e-181 640.2 1160 38.0
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 4.0e-172 610.1 573 58.6
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.3e-167 594.3 1525 31.7
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.6e-165 587.0 1347 34.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.4e-156 557.8 839 44.0
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.4e-153 548.5 734 43.9
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.6e-149 535.0 916 38.9
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.7e-133 480.7 1380 30.2
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.2e-129 467.2 1176 35.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.0e-119 436.0 452 54.6
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.5e-105 389.0 1427 27.0
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.4e-102 377.9 580 40.5
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 3.3e-97 361.3 1598 24.8
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.0e-95 354.8 526 39.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.2e-94 352.8 529 39.1
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.3e-89 334.7 342 56.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 3.6e-88 331.3 1484 26.7
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.3e-87 328.6 497 45.3
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.8e-86 323.9 466 45.7
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.2e-80 303.9 290 51.7
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.5e-75 288.1 323 52.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 5.4e-68 264.2 347 45.2
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.3e-58 232.3 210 61.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-55 222.2 235 52.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.4e-52 211.1 150 70.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-49 203.4 746 26.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.2e-44 185.3 421 43.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-43 183.3 284 41.9
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 7.9e-43 180.6 102 92.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 5.6e-41 174.5 151 63.6
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.8e-40 171.4 551 26.7
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-39 167.2 699 23.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 7.6e-38 164.1 126 68.3
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 7.4e-33 147.5 153 54.2
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 6.3e-32 144.4 331 30.5
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.1e-31 141.7 214 41.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.0e-26 127.1 648 24.8
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.3e-24 120.2 102 60.8
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.7e-24 118.6 360 27.2
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 7.9e-19 100.9 181 37.6
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.5e-14 86.7 100 47.0
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.7e-11 75.1 48 75.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 7.9e-11 74.3 223 27.8
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.3e-10 72.8 231 27.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 3.0e-10 72.4 68 55.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.7e-08 66.6 56 60.7
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.7e-08 65.5 77 51.9
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 6.3e-08 64.7 52 63.5


User provided reference genes

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