Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p15410 Brassica napus HOM05D000873 ORTHO05D028285 3.1e-30 134.4 65 100.0
BolC1t01495H Brassica oleracea HOM05D000873 ORTHO05D028285 3.1e-30 134.4 65 100.0
BraA01t01224Z Brassica rapa HOM05D000873 ORTHO05D028285 8.1e-23 109.8 65 86.2
THA.LOC104812953 Tarenaya hassleriana HOM05D000873 ORTHO05D001654 1.1e-11 72.8 39 84.6
AL7G32580 Arabidopsis lyrata HOM05D000873 ORTHO05D001654 2.5e-11 71.6 39 82.1
Carub.0007s1995 Capsella rubella HOM05D000873 ORTHO05D001654 2.5e-11 71.6 39 82.1
Aa31LG9G9410 Aethionema arabicum HOM05D000873 ORTHO05D001654 5.5e-11 70.5 39 82.1
AL6G48630 Arabidopsis lyrata HOM05D000873 ORTHO05D001654 5.5e-11 70.5 39 82.1
AT4G05020 Arabidopsis thaliana HOM05D000873 ORTHO05D001654 5.5e-11 70.5 39 82.1
AT4G21490 Arabidopsis thaliana HOM05D000873 ORTHO05D001654 5.5e-11 70.5 39 82.1
Cpa.g.sc27.129 Carica papaya HOM05D000873 ORTHO05D001654 5.5e-11 70.5 39 82.1
Thhalv10024771m.g Eutrema salsugineum HOM05D000873 ORTHO05D001654 7.2e-11 70.1 36 88.9
Carub.0006s3299 Capsella rubella HOM05D000873 ORTHO05D001654 9.3e-11 69.7 37 86.5
CARHR252510 Cardamine hirsuta HOM05D000873 ORTHO05D001654 9.3e-11 69.7 37 86.5
THA.LOC104812710 Tarenaya hassleriana HOM05D000873 ORTHO05D001654 1.2e-10 69.3 39 79.5
BcaB01g01865 Brassica carinata HOM05D000873 ORTHO05D001654 3.5e-10 67.8 37 83.8
Sp6g03920 Schrenkiella parvula HOM05D000873 ORTHO05D001654 4.6e-10 67.4 37 83.8
Hund21277 Selenicereus undatus HOM05D000873 ORTHO05D001654 3.0e-09 64.7 53 58.5
TWI38G1526 Tripterygium wilfordii HOM05D000873 ORTHO05D001654 3.0e-09 64.7 38 76.3
Atru.chr10.2015 Acer truncatum HOM05D000873 ORTHO05D001654 8.7e-09 63.2 36 80.6
Ah.14g088910 Amaranthus hybridus HOM05D000873 ORTHO05D001654 8.7e-09 63.2 38 76.3
BcaC04g21366 Brassica carinata HOM05D000873 ORTHO05D001654 8.7e-09 63.2 39 74.4
A09p25780 Brassica napus HOM05D000873 ORTHO05D001654 8.7e-09 63.2 39 74.4
C09p32660 Brassica napus HOM05D000873 ORTHO05D001654 8.7e-09 63.2 39 74.4
BolC9t56112H Brassica oleracea HOM05D000873 ORTHO05D001654 8.7e-09 63.2 39 74.4
BraA09t38147Z Brassica rapa HOM05D000873 ORTHO05D001654 8.7e-09 63.2 39 74.4
AUR62014717 Chenopodium quinoa HOM05D000873 ORTHO05D001654 8.7e-09 63.2 38 76.3
AUR62016896 Chenopodium quinoa HOM05D000873 ORTHO05D001654 8.7e-09 63.2 38 76.3
MELO3C002555.2 Cucumis melo HOM05D000873 ORTHO05D001654 1.9e-08 62.0 48 58.3
MELO3C013534.2 Cucumis melo HOM05D000873 ORTHO05D001654 2.5e-08 61.6 35 77.1
CAN.G424.16 Capsicum annuum HOM05D000873 ORTHO05D001654 3.3e-08 61.2 39 71.8
CiPaw.09G157700 Carya illinoinensis HOM05D000873 ORTHO05D001654 3.3e-08 61.2 36 77.8
Solyc02g079170.3 Solanum lycopersicum HOM05D000873 ORTHO05D001654 5.7e-08 60.5 38 73.7
Sopen02g023970 Solanum pennellii HOM05D000873 ORTHO05D001654 5.7e-08 60.5 38 73.7
PGSC0003DMG400022405 Solanum tuberosum HOM05D000873 ORTHO05D001654 5.7e-08 60.5 38 73.7
ClCG02G017330 Citrullus lanatus HOM05D000873 ORTHO05D001654 9.7e-08 59.7 35 74.3
CsaV3_6G012430 Cucumis sativus L. HOM05D000873 ORTHO05D001654 9.7e-08 59.7 35 74.3
Eucgr.E03807 Eucalyptus grandis HOM05D000873 ORTHO05D001654 9.7e-08 59.7 36 77.8
PGR142G1671 Punica granatum HOM05D000873 ORTHO05D001654 9.7e-08 59.7 35 71.4
Sed0015772 Sechium edule HOM05D000873 ORTHO05D001654 9.7e-08 59.7 35 74.3
EL10Ac7g17809 Beta vulgaris HOM05D000873 ORTHO05D001654 1.3e-07 59.3 38 71.1
Lj1A1213T39 Lonicera japonica HOM05D000873 ORTHO05D001654 1.3e-07 59.3 36 72.2
RcHm_v2.0_Chr2g0161871 Rosa chinensis HOM05D000873 ORTHO05D001654 1.3e-07 59.3 38 71.1
EL10Ac8g20533 Beta vulgaris HOM05D000873 ORTHO05D001654 1.6e-07 58.9 36 75.0
CSS0029454 Camellia sinensis var. sinensis HOM05D000873 ORTHO05D001654 1.6e-07 58.9 36 75.0
Oeu036683.1 Olea europaea HOM05D000873 ORTHO05D001654 1.6e-07 58.9 38 68.4
PGR042G2491 Punica granatum HOM05D000873 ORTHO05D001654 1.6e-07 58.9 36 72.2
PSO675G2723 Papaver somniferum HOM05D000873 ORTHO05D001654 2.2e-07 58.5 35 74.3
TWI38G0545 Tripterygium wilfordii HOM05D000873 ORTHO05D001654 2.2e-07 58.5 36 72.2
FAN14G3606 Fragaria x ananassa HOM05D000873 ORTHO05D001654 2.8e-07 58.2 38 68.4
Lsat_1_v5_gn_3_39940 Lactuca sativa HOM05D000873 ORTHO05D001654 2.8e-07 58.2 37 64.9
MBI02_g47876_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 2.8e-07 58.2 57 47.4
Aqoxy1G03889 Aquilegia oxysepala HOM05D000873 ORTHO05D001654 3.7e-07 57.8 35 71.4
ClCG03G005510 Citrullus lanatus HOM05D000873 ORTHO05D001654 3.7e-07 57.8 36 75.0
CsaV3_1G011780 Cucumis sativus L. HOM05D000873 ORTHO05D001654 3.7e-07 57.8 36 75.0
Eucgr.K00928 Eucalyptus grandis HOM05D000873 ORTHO05D001654 3.7e-07 57.8 35 68.6
Sed0015030 Sechium edule HOM05D000873 ORTHO05D001654 3.7e-07 57.8 36 75.0
Sed0023335 Sechium edule HOM05D000873 ORTHO05D001654 3.7e-07 57.8 36 75.0
SGA_v2.0_scaffold70G23464 Striga asiatica HOM05D000873 ORTHO05D001654 3.7e-07 57.8 52 57.7
Nitab4.5_0000190g0080 Nicotiana tabacum HOM05D000873 ORTHO05D001654 4.8e-07 57.4 38 68.4
Nitab4.5_0008145g0020 Nicotiana tabacum HOM05D000873 ORTHO05D001654 4.8e-07 57.4 38 68.4
Peaxi162Scf00619g00911 Petunia axillaris HOM05D000873 ORTHO05D001654 4.8e-07 57.4 38 68.4
MSTRG.14677 Avicennia marina HOM05D000873 ORTHO05D001654 6.3e-07 57.0 36 72.2
EL10Ac7g17770 Beta vulgaris HOM05D000873 ORTHO05D001654 6.3e-07 57.0 34 76.5
CSS0011946 Camellia sinensis var. sinensis HOM05D000873 ORTHO05D001654 6.3e-07 57.0 35 74.3
Migut.H01516 Erythranthe guttata HOM05D000873 ORTHO05D001654 6.3e-07 57.0 38 68.4
Hma1.2p1_0565F.1_g179530 Hydrangea macrophylla HOM05D000873 ORTHO05D001654 6.3e-07 57.0 35 74.3
Lj1C735T10 Lonicera japonica HOM05D000873 ORTHO05D001654 6.3e-07 57.0 35 74.3
GSVIVG01006114001 Vitis vinifera HOM05D000873 ORTHO05D001654 6.3e-07 57.0 36 72.2
GSVIVG01006508001 Vitis vinifera HOM05D000873 ORTHO05D001654 6.3e-07 57.0 36 72.2
Dinv18993 Davidia involucrata HOM05D000873 ORTHO05D001654 8.2e-07 56.6 36 69.4
Ciclev10014723m.g Citrus clementina HOM05D000873 ORTHO05D001654 1.1e-06 56.2 36 69.4
DCAR_008071 Daucus carota HOM05D000873 ORTHO05D001654 1.1e-06 56.2 39 66.7
Nn1g06769 Nelumbo nucifera HOM05D000873 ORTHO05D001654 1.1e-06 56.2 51 52.9
HPP92_004168 Vanilla planifolia HOM05D000873 ORTHO05D001654 1.1e-06 56.2 38 68.4
ATR0693G094 Amborella trichopoda HOM05D000873 ORTHO05D001654 1.4e-06 55.8 35 71.4
Aqoxy1G02724 Aquilegia oxysepala HOM05D000873 ORTHO05D001654 1.4e-06 55.8 39 64.1
A03p08020 Brassica napus HOM05D000873 ORTHO05D001654 1.4e-06 55.8 37 67.6
BraA03t10127Z Brassica rapa HOM05D000873 ORTHO05D001654 1.4e-06 55.8 37 67.6
ECA246G1471 Erigeron canadensis HOM05D000873 ORTHO05D001654 1.4e-06 55.8 35 71.4
Lsat_1_v5_gn_3_39960 Lactuca sativa HOM05D000873 ORTHO05D001654 1.4e-06 55.8 35 71.4
Hund23604 Selenicereus undatus HOM05D000873 ORTHO05D001654 1.4e-06 55.8 38 65.8
GSVIVG01030007001 Vitis vinifera HOM05D000873 ORTHO05D001654 1.4e-06 55.8 35 71.4
arahy.Tifrunner.gnm1.ann1.80FISQ Arachis hypogaea HOM05D000873 ORTHO05D001654 1.8e-06 55.5 36 69.4
arahy.Tifrunner.gnm1.ann1.YRN4PU Arachis hypogaea HOM05D000873 ORTHO05D001654 1.8e-06 55.5 36 69.4
Glyma.15G067300 Glycine max HOM05D000873 ORTHO05D001654 1.8e-06 55.5 36 66.7
Os08g0141400 Oryza sativa ssp. japonica HOM05D000873 ORTHO05D001654 1.8e-06 55.5 39 69.2
SGA_v2.0_scaffold49G18278 Striga asiatica HOM05D000873 ORTHO05D001654 1.8e-06 55.5 29 82.8
vmacro12261 Vaccinium macrocarpon HOM05D000873 ORTHO05D001654 1.8e-06 55.5 35 71.4
Gohir.A06G123600 Gossypium hirsutum HOM05D000873 ORTHO05D001654 2.4e-06 55.1 37 64.9
Gohir.D06G128400 Gossypium hirsutum HOM05D000873 ORTHO05D001654 2.4e-06 55.1 37 64.9
Gorai.010G150000 Gossypium raimondii HOM05D000873 ORTHO05D001654 2.4e-06 55.1 37 64.9
Os05g0331200 Oryza sativa ssp. japonica HOM05D000873 ORTHO05D001654 2.4e-06 55.1 38 63.2
DCAR_012979 Daucus carota HOM05D000873 ORTHO05D001654 3.1e-06 54.7 34 70.6
Duzib192G0969 Durio zibethinus HOM05D000873 ORTHO05D001654 3.1e-06 54.7 38 63.2
MBI02_g06005_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 3.1e-06 54.7 57 49.1
MD09G1096300 Malus domestica HOM05D000873 ORTHO05D001654 3.1e-06 54.7 50 50.0
RcHm_v2.0_Chr5g0006291 Rosa chinensis HOM05D000873 ORTHO05D001654 3.1e-06 54.7 36 69.4
unitig_26.g9372 Utricularia gibba HOM05D000873 ORTHO05D001654 3.1e-06 54.7 32 71.9
VMungo1127G1990 Vigna mungo HOM05D000873 ORTHO05D001654 3.1e-06 54.7 37 64.9
Ca_00251_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 63.9
Ca_29768_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 63.9
Glyma.06G298300 Glycine max HOM05D000873 ORTHO05D001654 4.1e-06 54.3 35 65.7
Glyma.12G106900 Glycine max HOM05D000873 ORTHO05D001654 4.1e-06 54.3 35 65.7
HanXRQChr17g0542191 Helianthus annuus HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 66.7
Medtr2g011730 Medicago truncatula HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 66.7
Potri.011G042500 Populus trichocarpa HOM05D000873 ORTHO05D001654 4.1e-06 54.3 57 47.4
TAR629G3479 Trochodendron aralioides HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 66.7
VMungo0540G1328 Vigna mungo HOM05D000873 ORTHO05D001654 4.1e-06 54.3 36 66.7
Actinidia09901 Actinidia chinensis HOM05D000873 ORTHO05D001654 5.3e-06 53.9 35 65.7
Actinidia12456 Actinidia chinensis HOM05D000873 ORTHO05D001654 5.3e-06 53.9 35 65.7
BcaB01g05248 Brassica carinata HOM05D000873 ORTHO05D001654 5.3e-06 53.9 37 64.9
C03p09280 Brassica napus HOM05D000873 ORTHO05D001654 5.3e-06 53.9 37 64.9
BolC3t13424H Brassica oleracea HOM05D000873 ORTHO05D001654 5.3e-06 53.9 37 64.9
Cfa000349 Carpinus fangiana HOM05D000873 ORTHO05D001654 5.3e-06 53.9 36 69.4
MD05G1325700 Malus domestica HOM05D000873 ORTHO05D001654 5.3e-06 53.9 36 66.7
Phvul.006G192400 Phaseolus vulgaris HOM05D000873 ORTHO05D001654 5.3e-06 53.9 36 66.7
Psat7g109280 Pisum sativum HOM05D000873 ORTHO05D001654 5.3e-06 53.9 38 65.8
Sabra11G0029200 Salix brachista HOM05D000873 ORTHO05D001654 5.3e-06 53.9 57 49.1
Thecc.06G199800 Theobroma cacao HOM05D000873 ORTHO05D001654 5.3e-06 53.9 35 65.7
vmacro03808 Vaccinium macrocarpon HOM05D000873 ORTHO05D001654 5.3e-06 53.9 35 68.6
VMungo0251G0252 Vigna mungo HOM05D000873 ORTHO05D001654 5.3e-06 53.9 39 61.5
Atru.chr6.3071 Acer truncatum HOM05D000873 ORTHO05D001654 6.9e-06 53.5 35 65.7
arahy.Tifrunner.gnm1.ann1.45YXM3 Arachis hypogaea HOM05D000873 ORTHO05D001654 6.9e-06 53.5 50 50.0
arahy.Tifrunner.gnm1.ann1.LPP4UJ Arachis hypogaea HOM05D000873 ORTHO05D001654 6.9e-06 53.5 50 50.0
CDE05G2097 Ceratophyllum demersum HOM05D000873 ORTHO05D001654 6.9e-06 53.5 39 61.5
Ca_18480_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 66.7
Cc02_g12400 Coffea canephora HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 69.4
Glyma.12G107000 Glycine max HOM05D000873 ORTHO05D001654 6.9e-06 53.5 50 48.0
Glyma.13G246600 Glycine max HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 63.9
Lj3g0011092 Lotus japonicus HOM05D000873 ORTHO05D001654 6.9e-06 53.5 35 65.7
Lj6g0015860 Lotus japonicus HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 66.7
Nitab4.5_0002370g0060 Nicotiana tabacum HOM05D000873 ORTHO05D001654 6.9e-06 53.5 35 68.6
Potri.013G147300 Populus trichocarpa HOM05D000873 ORTHO05D001654 6.9e-06 53.5 50 50.0
Prupe.4G037100 Prunus persica HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 63.9
QL04p018222 Quercus lobata HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 63.9
QL07p038733 Quercus lobata HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 66.7
QL07p038984 Quercus lobata HOM05D000873 ORTHO05D001654 6.9e-06 53.5 36 66.7
Rhsim13G0169800 Rhododendron simsii HOM05D000873 ORTHO05D001654 6.9e-06 53.5 35 68.6
TWI36G1389 Tripterygium wilfordii HOM05D000873 ORTHO05D001654 6.9e-06 53.5 35 65.7
HPP92_017631 Vanilla planifolia HOM05D000873 ORTHO05D001654 6.9e-06 53.5 39 61.5
Haze_13089 Corylus avellana HOM05D000873 ORTHO05D001654 9.0e-06 53.1 35 62.9
ECA234G3564 Erigeron canadensis HOM05D000873 ORTHO05D001654 9.0e-06 53.1 34 67.6
HanXRQChr17g0542181 Helianthus annuus HOM05D000873 ORTHO05D001654 9.0e-06 53.1 35 68.6
Lalb_Chr03g0029161 Lupinus albus HOM05D000873 ORTHO05D001654 9.0e-06 53.1 31 71.0
Peaxi162Scf00007g02727 Petunia axillaris HOM05D000873 ORTHO05D001654 9.0e-06 53.1 35 68.6
SalBow7G1296 Salvia bowleyana HOM05D000873 ORTHO05D001654 9.0e-06 53.1 35 68.6
SalBow7G3266 Salvia bowleyana HOM05D000873 ORTHO05D001654 9.0e-06 53.1 38 63.2
SalBow7G3273 Salvia bowleyana HOM05D000873 ORTHO05D001654 9.0e-06 53.1 38 63.2
TPR.G25715 Trifolium pratense HOM05D000873 ORTHO05D001654 9.0e-06 53.1 38 63.2
Zm00001eb172970 Zea mays HOM05D000873 ORTHO05D001654 9.0e-06 53.1 39 61.5


User provided reference genes

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