Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 6.1e-222 773.9 398 100.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-220 769.6 398 99.5
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-219 765.4 398 99.2
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.7e-214 747.7 400 97.2
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.4e-212 741.1 398 97.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-204 715.7 401 94.3
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.6e-192 674.1 400 88.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.1e-189 665.2 404 86.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.3e-184 649.0 404 84.4
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 8.7e-184 647.1 405 84.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.1e-181 640.2 404 83.4
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.7e-179 632.9 403 82.9
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 6.4e-171 604.4 403 79.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.5e-148 528.5 400 69.2
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.8e-128 461.5 399 63.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.2e-127 460.7 406 62.8
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 9.7e-127 457.6 373 66.0
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-125 454.1 391 63.2
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.4e-125 453.8 370 64.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.1e-125 452.6 387 65.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.1e-125 452.6 395 62.0
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.2e-124 450.7 377 63.1
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.0e-124 449.9 381 61.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.5e-124 448.7 385 61.6
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 7.7e-124 448.0 391 61.6
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.3e-123 447.2 394 61.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.7e-123 446.8 392 62.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.9e-123 446.0 365 64.1
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.5e-123 444.9 382 63.1
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 8.5e-123 444.5 352 63.9
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.5e-122 443.0 406 60.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.5e-122 443.0 375 63.5
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.2e-122 442.6 392 61.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.2e-122 442.2 369 63.1
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 9.4e-122 441.0 353 65.4
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-121 440.7 358 64.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.6e-121 440.3 369 63.1
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.1e-121 439.9 373 64.1
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 6.1e-121 438.3 352 63.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 8.0e-121 438.0 365 63.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 8.0e-121 438.0 371 62.3
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 8.0e-121 438.0 366 62.8
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.0e-120 437.6 389 61.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.8e-120 436.8 388 59.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.8e-120 436.8 363 63.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.8e-120 436.8 365 63.0
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.3e-120 436.4 366 62.3
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.3e-120 436.4 366 62.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.0e-120 436.0 377 62.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 5.2e-120 435.3 394 59.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 6.8e-120 434.9 366 61.7
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 6.8e-120 434.9 385 60.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 6.8e-120 434.9 376 62.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 8.8e-120 434.5 365 64.1
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.2e-119 434.1 362 63.3
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.2e-119 434.1 362 63.3
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.5e-119 433.7 412 57.5
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.5e-119 433.7 356 62.9
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.0e-119 433.3 353 64.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.4e-119 432.2 419 57.5
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.4e-119 432.2 383 60.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 5.7e-119 431.8 390 60.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 5.7e-119 431.8 386 60.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 9.8e-119 431.0 424 58.7
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.3e-118 430.6 353 63.2
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-118 430.3 391 59.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.2e-118 429.9 368 62.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 2.8e-118 429.5 364 62.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 6.3e-118 428.3 350 63.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 3.1e-117 426.0 411 56.7
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 5.4e-117 425.2 411 57.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.2e-116 424.1 369 62.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.0e-116 423.3 377 60.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.7e-116 422.9 358 63.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.5e-116 422.5 391 58.6
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.5e-116 422.2 394 57.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.7e-116 421.4 404 55.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 7.7e-116 421.4 358 62.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.0e-115 421.0 391 58.3
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.3e-115 420.6 384 58.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.3e-115 419.9 365 60.0
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.0e-115 418.7 371 58.8
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 5.0e-115 418.7 394 58.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.1e-114 417.5 356 61.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.5e-114 417.2 369 59.6
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.2e-114 415.6 370 61.4
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 7.2e-114 414.8 368 59.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 7.2e-114 414.8 329 65.3
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 9.5e-114 414.5 287 72.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.6e-113 412.5 384 59.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.7e-113 412.1 287 72.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.8e-112 410.2 378 59.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.2e-111 407.5 353 58.6
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.6e-111 406.4 383 59.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.8e-110 402.9 360 59.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.4e-109 400.6 355 60.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.4e-109 400.6 287 70.0
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.4e-109 399.8 355 60.8
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.2e-109 399.4 358 58.7
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.4e-109 398.7 410 54.4
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.0e-109 398.3 351 60.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-108 397.1 384 58.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.5e-108 396.0 418 56.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.5e-108 395.6 381 58.5
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.5e-108 395.6 370 57.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.9e-108 395.2 399 54.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.7e-107 393.7 329 62.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.3e-107 393.3 379 58.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.9e-107 392.5 379 58.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-106 391.0 379 58.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 4.3e-106 389.0 366 55.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-106 388.7 379 58.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 5.6e-106 388.7 379 58.8
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.3e-106 388.3 380 58.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.3e-106 388.3 380 58.9
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-105 387.5 358 60.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.8e-105 386.3 356 57.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.6e-105 386.0 362 56.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-104 384.0 380 58.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 3.1e-104 382.9 351 60.4
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.8e-104 381.7 392 55.9
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 8.9e-104 381.3 357 55.2
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.2e-103 380.9 361 57.6
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.8e-103 377.9 356 58.7
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.2e-102 376.7 286 67.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.4e-101 373.2 358 58.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.6e-100 370.5 358 57.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.3e-99 367.5 290 60.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 7.3e-98 361.7 333 56.2
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.1e-97 360.1 364 53.0
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.8e-95 352.1 366 55.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.4e-88 330.9 285 61.8
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.3e-88 330.1 282 61.7
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.2e-88 328.9 400 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.2e-84 317.8 355 48.7
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.6e-84 315.8 251 65.7
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-83 314.3 352 51.7
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.1e-81 307.0 247 62.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 7.9e-68 261.9 204 64.2
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 7.4e-58 228.8 291 40.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.2e-54 217.2 295 40.7
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.5e-52 209.9 171 64.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-51 208.0 155 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-38 164.9 256 41.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.4e-27 128.3 246 37.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 4.8e-25 119.8 189 40.7
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.1e-21 108.6 108 53.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 4.2e-21 106.7 174 40.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.1e-20 104.4 282 27.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 9.7e-18 95.5 117 45.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.5e-15 87.0 69 62.3
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.9e-15 86.3 53 75.5
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 3.1e-08 63.9 101 35.6


User provided reference genes

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