Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 4.9e-35 150.6 76 100.0
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 5.4e-26 120.6 97 71.1
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 1.2e-25 119.4 97 70.1
Sp7g19100 Schrenkiella parvula HOM05D012071 ORTHO05D013970 3.5e-25 117.9 93 71.0
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 2.1e-22 108.6 54 98.1
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 2.1e-22 108.6 54 98.1
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 4.9e-19 97.4 83 66.3
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 8.3e-19 96.7 85 64.7
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 1.4e-18 95.9 83 65.1
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 1.4e-18 95.9 48 95.8
BolC7t45606H Brassica oleracea HOM05D012071 ORTHO05D013970 3.2e-18 94.7 83 65.1
Carub.0007s2040 Capsella rubella HOM05D012071 ORTHO05D013970 9.2e-18 93.2 100 59.0
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 1.2e-17 92.8 49 91.8
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 1.6e-17 92.4 53 86.8
Thhalv10026664m.g Eutrema salsugineum HOM05D012071 ORTHO05D013970 3.5e-17 91.3 96 59.4
AL7G33090 Arabidopsis lyrata HOM05D012071 ORTHO05D013970 7.8e-17 90.1 49 89.8
A08p15420 Brassica napus HOM05D012071 ORTHO05D013970 6.8e-13 77.0 45 84.4
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 8.9e-13 76.6 42 90.5
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 5.4e-10 67.4 76 51.3
BcaB03g11702 Brassica carinata HOM05D012071 ORTHO05D013970 1.3e-08 62.8 48 70.8
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 2.3e-08 62.0 74 55.4
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 3.0e-08 61.6 77 54.5
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 3.0e-08 61.6 89 48.3
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.1e-07 59.7 95 44.2
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.5e-07 59.3 74 50.0
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.5e-07 59.3 86 46.5
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.5e-07 59.3 85 44.7
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.5e-07 58.5 87 44.8
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.5e-07 58.5 85 48.2
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 3.3e-07 58.2 86 44.2
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 4.3e-07 57.8 39 79.5
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 5.6e-07 57.4 95 46.3
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 5.6e-07 57.4 81 48.1
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.6e-07 57.4 84 47.6
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 9.6e-07 56.6 52 61.5
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 9.6e-07 56.6 79 44.3
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 9.6e-07 56.6 86 47.7
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.2e-06 56.2 39 76.9
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.2e-06 56.2 39 76.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.2e-06 56.2 71 52.1
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.2e-06 56.2 72 47.2
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.2e-06 56.2 81 50.6
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.2e-06 56.2 60 58.3
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-06 56.2 85 45.9
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.6e-06 55.8 92 47.8
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.6e-06 55.8 88 42.0
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 2.1e-06 55.5 74 50.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 2.1e-06 55.5 74 50.0
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 2.1e-06 55.5 74 50.0
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 2.1e-06 55.5 74 50.0
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.1e-06 55.5 84 45.2
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 2.8e-06 55.1 46 69.6
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.7e-06 54.3 80 46.2
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 6.2e-06 53.9 44 70.5
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 8.1e-06 53.5 39 71.8
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 8.1e-06 53.5 59 57.6
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 8.1e-06 53.5 91 40.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.1e-06 53.5 83 44.6


User provided reference genes

Program Settings