Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 4.4e-161 571.2 292 100.0
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 4.4e-161 571.2 292 100.0
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.1e-159 566.6 292 99.0
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.6e-158 562.8 292 98.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 5.3e-154 547.7 292 95.2
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 4.4e-153 544.7 292 94.5
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 5.8e-153 544.3 292 93.8
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 3.8e-152 541.6 292 94.2
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 6.4e-152 540.8 292 93.5
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 8.4e-152 540.4 292 93.8
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 2.1e-139 499.2 292 86.6
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 3.0e-133 478.8 294 82.3
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 3.1e-122 442.2 291 75.3
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.1e-122 441.8 295 75.3
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.1e-122 441.8 295 75.6
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 9.0e-122 440.7 295 76.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 9.0e-122 440.7 295 73.6
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 9.0e-122 440.7 295 73.6
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 1.2e-121 440.3 294 76.5
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.2e-121 440.3 294 75.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.5e-121 439.9 295 75.3
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-121 439.1 296 75.7
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.4e-121 438.7 291 75.9
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 4.5e-121 438.3 296 74.0
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.7e-120 436.4 295 74.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.9e-120 435.6 291 74.2
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 3.8e-120 435.3 295 74.6
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.8e-120 435.3 294 74.5
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 5.5e-119 431.4 293 73.7
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.2e-118 430.3 295 74.2
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.1e-118 429.5 294 73.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 2.7e-118 429.1 294 73.5
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.6e-118 428.3 295 72.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 6.1e-118 427.9 294 73.1
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.0e-117 427.2 295 73.6
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.0e-117 427.2 295 72.5
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.8e-117 426.4 298 72.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.3e-117 426.0 292 71.2
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.3e-117 426.0 294 73.8
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.3e-117 426.0 294 72.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.0e-117 425.6 295 72.9
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 5.1e-117 424.9 302 72.2
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 8.8e-117 424.1 292 72.6
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.1e-116 423.7 302 72.2
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.0e-116 422.9 294 72.8
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 2.0e-116 422.9 294 73.1
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.0e-116 422.9 295 72.5
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.3e-116 422.2 294 73.1
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 4.3e-116 421.8 294 72.4
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 4.3e-116 421.8 294 71.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 5.7e-116 421.4 291 72.5
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 7.4e-116 421.0 296 71.6
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 9.7e-116 420.6 294 71.4
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.7e-116 420.6 295 71.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.7e-116 420.6 295 71.9
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.3e-115 420.2 294 71.8
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 2.8e-115 419.1 294 70.7
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 8.2e-115 417.5 296 70.9
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-114 417.2 295 71.2
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.1e-114 417.2 296 70.6
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.4e-114 416.8 295 70.5
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.8e-114 416.4 293 72.7
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.1e-114 415.6 295 70.8
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 4.1e-114 415.2 295 69.8
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 5.3e-114 414.8 295 69.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 70.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 70.5
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.2e-113 413.7 294 70.7
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 2.6e-113 412.5 292 70.2
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 3.4e-113 412.1 289 72.0
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 7.7e-113 411.0 295 69.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.2e-112 409.5 292 70.2
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.0e-112 408.3 296 68.9
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.5e-112 407.9 312 66.7
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 6.5e-112 407.9 295 70.5
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.4e-111 406.8 295 69.2
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.9e-111 406.4 295 69.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.9e-111 406.4 312 66.3
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.9e-111 406.4 295 70.2
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.2e-111 405.6 289 71.6
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 4.2e-111 405.2 292 70.2
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.5e-111 404.8 311 66.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 5.5e-111 404.8 292 69.5
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.2e-110 403.7 339 62.2
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.6e-110 403.3 295 67.5
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.1e-110 402.9 295 69.2
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.1e-110 402.9 297 68.4
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.7e-110 402.5 296 68.9
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.7e-110 401.7 282 70.9
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.7e-110 401.7 296 68.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 6.1e-110 401.4 294 67.7
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.9e-110 401.0 296 68.9
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.4e-109 400.2 292 69.2
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.8e-109 399.8 295 67.1
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.8e-109 399.8 296 68.9
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 3.9e-109 398.7 296 68.2
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 5.2e-109 398.3 295 68.1
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.8e-109 397.5 248 78.6
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.0e-108 396.4 282 70.6
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.6e-108 396.0 295 66.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 5.7e-108 394.8 294 68.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 5.7e-108 394.8 297 67.0
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.7e-107 393.3 277 71.8
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-107 392.9 294 68.0
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.8e-107 392.5 267 73.8
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.4e-106 390.2 284 68.3
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.1e-106 388.7 288 68.8
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.5e-105 385.6 293 67.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.7e-100 368.2 317 61.2
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 9.1e-90 334.3 294 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.6e-89 333.6 287 56.1
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.1e-87 327.4 216 74.1
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 7.2e-87 324.7 294 58.2
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.2e-86 323.9 221 72.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 4.7e-86 322.0 222 73.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.0e-85 320.9 290 54.8
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 4.4e-84 315.5 216 70.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.7e-84 315.1 288 55.2
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-82 310.8 279 60.2
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.8e-82 310.1 290 54.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 3.5e-81 305.8 223 69.5
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.0e-80 304.3 262 57.3
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.9e-80 302.8 290 52.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.0e-77 294.3 295 53.2
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.5e-73 279.3 269 55.8
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 7.8e-73 278.1 213 63.8
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 4.4e-68 262.3 176 75.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-67 260.0 252 57.1
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.1e-66 255.8 252 52.4
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-61 241.1 223 58.7
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.4e-58 229.9 202 58.9
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 3.5e-57 226.1 150 74.7
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 4.9e-51 205.7 143 64.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.4e-50 204.1 162 60.5
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 3.2e-50 203.0 149 67.8
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.8e-45 187.2 135 68.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 6.9e-45 185.3 282 35.5
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.9e-39 167.2 181 52.5
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-36 157.1 145 57.9
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.4e-34 151.0 105 72.4
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.2e-33 147.9 302 33.1
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 3.7e-30 136.3 106 67.9
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 4.0e-29 132.9 98 62.2
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-26 122.5 106 62.3
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 4.5e-20 102.8 273 24.5
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 3.8e-19 99.8 116 51.7
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.6e-17 94.4 66 71.2
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 2.1e-17 94.0 91 59.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 7.9e-17 92.0 128 44.5
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.3e-16 91.3 81 56.8
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 5.9e-12 75.9 113 41.6
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-11 73.9 113 40.7
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 3.0e-08 63.5 45 66.7
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 5.1e-08 62.8 49 61.2
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 3.3e-07 60.1 51 58.8
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 8.2e-06 55.5 32 75.0


User provided reference genes

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