Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-101 373.6 238 100.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-101 373.6 238 100.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.1e-101 373.6 238 100.0
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 2.5e-93 345.9 250 91.6
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 5.5e-93 344.7 244 93.0
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-85 320.5 234 92.3
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 3.3e-82 308.9 239 88.3
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 9.7e-82 307.4 244 86.5
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.1e-80 303.9 244 85.7
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.7e-79 299.3 250 81.2
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 2.5e-77 292.7 246 80.9
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 3.2e-77 292.4 239 82.4
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 4.2e-77 292.0 238 83.2
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 4.2e-77 292.0 239 85.8
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 4.7e-76 288.5 238 81.1
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.5e-74 283.5 239 78.7
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 9.8e-74 280.8 175 92.0
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.4e-72 276.2 238 76.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.8e-58 227.6 241 66.8
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.3e-49 200.7 172 71.5
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 9.2e-48 194.5 148 70.9
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 3.3e-45 186.0 148 66.2
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 5.6e-45 185.3 199 55.8
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 1.2e-44 184.1 133 73.7
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 4.7e-44 182.2 185 56.8
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 1.4e-43 180.6 141 66.0
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.4e-43 180.6 193 54.9
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.3e-43 179.9 185 58.9
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 3.1e-43 179.5 180 59.4
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.1e-43 179.5 238 57.1
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 6.8e-43 178.3 143 65.7
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.2e-42 177.6 194 54.6
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 4.4e-42 175.6 140 70.0
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 5.8e-42 175.3 126 71.4
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 7.5e-42 174.9 187 56.1
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 9.9e-42 174.5 207 58.0
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 9.9e-42 174.5 143 67.1
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.3e-41 174.1 201 58.2
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.2e-41 173.3 142 64.8
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 2.9e-41 172.9 181 58.0
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 2.9e-41 172.9 195 53.8
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.7e-41 172.6 138 63.0
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 3.7e-41 172.6 194 54.6
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 4.9e-41 172.2 204 56.9
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 4.9e-41 172.2 204 56.9
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 4.9e-41 172.2 207 57.5
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 4.9e-41 172.2 204 56.9
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.9e-41 172.2 144 64.6
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 6.4e-41 171.8 140 63.6
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 6.4e-41 171.8 140 63.6
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 6.4e-41 171.8 149 64.4
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.1e-40 171.0 148 64.2
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.4e-40 170.6 202 57.4
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.4e-40 170.6 148 62.8
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.4e-40 170.6 141 64.5
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.9e-40 170.2 135 65.2
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.9e-40 170.2 190 55.8
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.9e-40 170.2 172 57.6
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-40 169.9 248 58.1
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-40 169.9 248 58.1
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 4.1e-40 169.1 140 62.9
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 4.1e-40 169.1 151 62.3
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 4.1e-40 169.1 130 67.7
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 7.1e-40 168.3 133 66.9
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 1.6e-39 167.2 154 65.6
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 1.6e-39 167.2 154 65.6
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.6e-39 167.2 170 55.9
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.5e-39 166.0 135 64.4
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 6.0e-39 165.2 133 63.2
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 7.8e-39 164.9 147 61.9
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.3e-38 164.1 230 50.9
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.3e-38 164.1 172 58.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 1.7e-38 163.7 190 51.1
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.9e-38 162.5 149 59.1
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 5.1e-38 162.2 240 48.8
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.1e-38 162.2 134 65.7
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 8.6e-38 161.4 194 53.6
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.5e-37 159.8 269 43.1
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.5e-37 159.8 135 62.2
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 3.3e-37 159.5 148 57.4
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 3.3e-37 159.5 182 52.7
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 3.3e-37 159.5 241 46.5
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 5.6e-37 158.7 142 60.6
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 7.3e-37 158.3 236 48.7
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 9.5e-37 157.9 132 63.6
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 9.5e-37 157.9 190 50.0
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 1.2e-36 157.5 152 59.9
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.2e-36 157.5 152 59.9
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.2e-36 157.5 151 56.3
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.6e-36 157.1 148 57.4
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 2.1e-36 156.8 153 62.7
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.6e-36 156.0 190 49.5
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.6e-36 156.0 152 59.2
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.2e-36 155.2 152 59.2
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.1e-35 154.5 149 58.4
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 1.1e-35 154.5 149 59.7
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.4e-35 154.1 173 54.9
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.4e-35 154.1 192 50.5
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 2.4e-35 153.3 175 51.4
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.1e-35 152.9 142 59.9
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 3.1e-35 152.9 130 60.8
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 8.9e-35 151.4 130 61.5
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 8.9e-35 151.4 198 52.0
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.2e-34 151.0 130 62.3
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-34 150.2 148 54.1
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 3.4e-34 149.4 130 60.0
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.4e-34 149.1 154 60.4
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 4.4e-34 149.1 131 61.1
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 5.8e-34 148.7 144 57.6
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.6e-34 148.3 135 60.0
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 9.9e-34 147.9 192 55.2
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.7e-33 147.1 138 56.5
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.7e-33 147.1 130 57.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.7e-33 147.1 126 61.1
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 2.2e-33 146.7 135 58.5
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.9e-33 146.4 134 60.4
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 3.8e-33 146.0 203 54.2
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.4e-32 144.1 203 53.2
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.9e-32 143.7 152 57.2
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 9.2e-32 141.4 148 53.4
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.0e-30 136.3 165 51.5
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 4.3e-29 132.5 130 54.6
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.6e-29 131.3 143 53.8
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.2e-28 131.0 239 51.0
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.4e-27 126.7 135 52.6
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.5e-26 124.0 192 46.9
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 2.2e-25 120.2 192 49.0
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.9e-25 119.0 104 61.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.2e-23 114.4 148 49.3
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.6e-23 114.0 204 43.6
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 6.0e-23 112.1 131 51.9
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 2.5e-21 106.7 145 46.9
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.1e-20 103.6 109 53.2
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 6.2e-20 102.1 110 52.7
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.5e-15 86.3 67 67.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 2.8e-12 76.6 175 42.9
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.2e-12 75.5 135 40.7
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 3.2e-08 63.2 69 58.0
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 9.3e-08 61.6 104 50.0
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 2.7e-07 60.1 104 50.0


User provided reference genes

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