Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 2243.0 1134 100.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 0.0e+00 2170.2 1140 96.8
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 0.0e+00 2005.3 1124 90.7
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 0.0e+00 1967.6 1125 89.9
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 1930.6 1124 88.0
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 0.0e+00 1760.7 1133 79.9
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 0.0e+00 1759.6 1140 79.6
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 0.0e+00 1750.3 1133 78.9
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 0.0e+00 1743.0 1139 79.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 0.0e+00 1716.0 1136 78.3
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 0.0e+00 1715.3 1134 77.9
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 0.0e+00 1413.7 1138 65.6
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.3e-253 880.6 1142 44.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 2.1e-243 846.7 1159 43.6
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.6e-241 839.7 1163 42.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 3.4e-233 812.8 1164 41.8
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 7.6e-233 811.6 1164 41.8
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.2e-224 783.5 1161 40.4
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.9e-224 783.1 1177 40.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.2e-222 777.7 1177 40.5
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.0e-221 774.6 1155 39.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.1e-220 771.2 1172 41.0
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 4.6e-214 749.2 1165 38.6
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.6e-212 742.3 1165 38.9
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.8e-211 740.0 1171 38.9
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.0e-210 736.1 1158 38.5
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 5.3e-210 735.7 1135 38.9
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.6e-206 722.6 1192 37.8
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.3e-205 720.3 1191 37.4
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 2.5e-204 716.8 1152 38.3
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.9e-199 700.7 1147 38.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.2e-198 698.0 1163 38.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1160 38.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 3.6e-198 696.4 1166 36.8
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 3.9e-197 693.0 1143 37.3
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 2.8e-195 686.8 1158 37.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 8.2e-195 685.3 1161 38.5
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.1e-194 684.9 1156 37.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 4.5e-193 679.5 1164 37.4
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.4e-191 674.5 1152 36.6
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 9.4e-191 671.8 1168 36.3
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.1e-190 670.6 1182 35.6
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 3.6e-190 669.8 1139 36.8
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 8.8e-189 665.2 1089 36.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.1e-188 664.8 1167 37.1
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.4e-186 657.1 1164 35.9
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.1e-183 648.3 975 40.3
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.4e-183 647.9 1144 37.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 4.7e-182 642.9 1099 38.4
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.3e-180 636.7 1154 36.3
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.2e-179 634.0 1176 36.3
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 2.8e-179 633.6 1162 35.6
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.3e-179 632.5 1141 37.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.3e-176 624.8 1159 36.2
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.9e-176 623.6 1156 35.3
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.0e-176 622.9 1256 35.3
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.1e-174 615.9 1165 35.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.2e-172 611.7 1173 35.3
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.5e-172 611.3 1144 35.8
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 6.5e-168 595.9 1036 37.1
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-166 590.9 1158 34.2
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.8e-165 587.8 1160 34.1
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.6e-164 583.9 1165 33.6
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.2e-163 580.9 1166 34.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1166 33.5
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1166 33.5
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 6.3e-163 579.3 1150 33.6
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.8e-162 577.8 1129 35.6
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 5.9e-161 572.8 940 38.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.5e-159 567.4 1003 37.1
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.8e-158 563.9 1153 33.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.6e-156 557.4 1157 32.9
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.4e-156 556.6 1159 33.0
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 9.8e-156 555.4 906 38.2
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 9.8e-156 555.4 1171 32.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 1.3e-155 555.1 1174 33.6
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.3e-155 555.1 1164 33.5
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.2e-155 554.3 1162 33.2
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 8.3e-155 552.4 1147 32.3
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 3.6e-150 537.0 1173 32.6
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.8e-149 534.6 1160 33.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 8.3e-147 525.8 1169 32.7
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 9.2e-146 522.3 1155 32.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 4.6e-145 520.0 1097 33.7
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 2.5e-143 514.2 1213 32.4
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.5e-140 505.0 1142 32.6
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 2.1e-137 494.6 364 73.9
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.0e-136 492.3 1216 30.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.3e-131 475.3 1124 32.3
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.3e-131 472.6 970 33.5
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 2.6e-124 451.1 1260 29.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.6e-121 441.8 956 32.8
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 9.6e-119 432.6 901 32.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 8.4e-107 392.9 1228 26.6
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 6.7e-104 383.3 660 38.2
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 4.9e-99 367.1 884 31.2
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 2.4e-93 348.2 887 29.0
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-80 305.4 187 83.4
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 7.7e-76 290.0 310 52.3
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.1e-73 282.0 310 51.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 3.6e-73 281.2 1266 24.7
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.8e-72 278.9 314 49.4
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.5e-71 275.8 309 49.2
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.4e-71 273.5 309 49.5
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 8.2e-70 270.0 306 47.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 7.7e-68 263.5 426 38.3
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.7e-67 262.3 791 28.2
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.0e-64 251.5 1273 23.8
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 3.3e-63 248.1 310 47.4
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 9.7e-55 219.9 304 41.4
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 6.3e-54 217.2 433 33.9
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.0e-51 209.9 270 46.3
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.3e-51 209.5 304 40.1
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.5e-50 204.1 175 57.1
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.2e-48 197.6 237 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.2e-47 196.4 1117 22.5
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 3.7e-46 191.4 244 42.6
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-45 188.7 135 72.6
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 3.1e-45 188.3 203 49.3
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.4e-45 187.6 415 33.0
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.7e-44 185.3 283 39.2
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 6.6e-43 180.6 177 57.6
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.5e-42 179.5 175 55.4
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.0e-39 169.1 175 50.3
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.7e-38 166.0 995 23.0
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 2.3e-35 155.6 128 71.1
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.5e-34 152.1 168 51.2
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.7e-28 132.1 79 84.8
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 6.0e-28 131.0 78 85.9
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.0e-27 130.2 245 32.7
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.5e-26 126.3 131 50.4
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 3.6e-25 121.7 361 26.3
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 6.2e-25 120.9 186 43.0
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.8e-24 117.5 286 28.0
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.2e-23 116.7 492 25.4
C03p82740 Brassica napus HOM05D050026 ORTHO05D041081 9.8e-23 113.6 432 29.2
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.1e-21 107.5 301 28.6
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.5e-18 99.8 227 31.7
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.7e-17 94.7 415 24.1
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.2e-15 90.1 98 50.0
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.0e-15 89.4 95 50.5
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.7e-14 86.3 94 50.0
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.4e-14 84.3 101 46.5
BolC3t20556H Brassica oleracea HOM05D050026 ORTHO05D041081 8.3e-14 84.0 279 29.4
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.4e-13 82.4 106 45.3
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.0e-12 77.8 87 49.4
BolC3t20555H Brassica oleracea HOM05D004959 ORTHO05D005961 2.5e-10 72.4 82 46.3
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 4.7e-09 68.2 65 52.3


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