Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 3.6e-129 464.9 235 100.0
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 3.6e-129 464.9 235 100.0
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.7e-115 419.5 235 91.1
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 9.5e-114 413.7 235 90.6
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 1.8e-112 409.5 246 87.4
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 2.9e-110 402.1 235 88.9
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 2.2e-102 375.9 247 81.0
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 1.5e-95 353.2 238 77.3
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 2.3e-91 339.3 239 76.2
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 4.3e-90 335.1 236 72.9
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.8e-75 286.6 256 61.3
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 4.1e-64 248.8 243 60.9
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 7.7e-63 244.6 192 70.8
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 3.1e-56 222.6 170 68.2
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 1.7e-54 216.9 239 50.6
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 2.9e-54 216.1 238 48.7
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 8.5e-54 214.5 239 50.6
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.4e-53 213.8 239 49.8
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 7.2e-53 211.5 245 48.2
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.4e-51 207.2 233 48.5
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 6.7e-51 204.9 252 48.4
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 8.8e-51 204.5 236 49.6
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 4.4e-50 202.2 234 47.4
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 7.4e-50 201.4 231 47.6
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 3.7e-49 199.1 241 48.1
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.1e-48 197.6 239 46.0
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.1e-48 197.6 242 48.3
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 1.4e-48 197.2 226 49.1
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 2.4e-48 196.4 245 47.3
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 1.2e-47 194.1 241 48.1
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 1.6e-47 193.7 243 46.9
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 1.0e-46 191.0 225 48.4
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 5.0e-46 188.7 223 49.8
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 5.0e-46 188.7 231 47.2
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.1e-45 187.6 199 50.8
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 1.5e-45 187.2 233 47.6
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 2.5e-45 186.4 229 45.9
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 2.5e-45 186.4 250 46.4
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 3.2e-45 186.0 203 50.7
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 3.2e-45 186.0 247 44.9
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 3.2e-45 186.0 199 50.3
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 4.2e-45 185.7 238 46.6
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 2.1e-44 183.3 197 51.8
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 2.1e-44 183.3 199 51.3
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 2.7e-44 183.0 235 43.4
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 3.6e-44 182.6 203 49.3
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 3.6e-44 182.6 228 46.9
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 4.7e-44 182.2 207 50.2
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 1.8e-43 180.3 199 50.8
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 4.0e-43 179.1 197 48.7
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 4.0e-43 179.1 233 45.9
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 5.2e-43 178.7 197 50.3
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 6.7e-43 178.3 225 47.1
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 6.7e-43 178.3 207 49.8
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 1.5e-42 177.2 239 45.2
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.6e-42 176.4 225 47.1
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 5.7e-42 175.3 203 48.8
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 2.2e-41 173.3 201 50.2
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 3.7e-41 172.6 231 44.2
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.4e-40 170.6 219 47.5
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 1.8e-40 170.2 200 50.0
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 5.3e-40 168.7 235 45.1
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 3.5e-39 166.0 199 47.2
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.5e-39 165.6 230 45.7
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 3.8e-38 162.5 206 47.6
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 3.8e-38 162.5 202 46.5
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 6.5e-38 161.8 202 47.5
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 6.1e-36 155.2 197 45.7
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 6.1e-36 155.2 172 50.0
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 1.8e-35 153.7 161 49.1
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 2.3e-35 153.3 212 43.9
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 5.2e-35 152.1 227 41.4
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 2.0e-34 150.2 197 45.7
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 4.8e-33 145.6 234 41.5
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 4.1e-32 142.5 202 45.0
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 3.5e-31 139.4 199 43.2
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 3.5e-31 139.4 183 44.8
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 8.5e-30 134.8 176 47.7
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 3.0e-27 126.3 172 45.9
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 4.5e-23 112.5 173 39.9
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 2.9e-22 109.8 180 42.8
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 1.2e-20 104.4 171 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 2.1e-20 103.6 188 38.8
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.0e-19 101.3 196 34.7
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 3.0e-19 99.8 138 44.9
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 4.0e-19 99.4 201 35.3
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 5.7e-18 95.5 80 58.8
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 7.5e-18 95.1 142 43.7
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 7.5e-18 95.1 145 44.8
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 1.3e-17 94.4 145 42.8
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.0e-15 87.0 62 64.5
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 7.8e-15 85.1 58 65.5
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 3.9e-14 82.8 246 28.5
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 5.0e-14 82.4 175 34.9
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.5e-13 80.1 63 58.7
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.1e-12 77.0 58 58.6
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 3.1e-11 73.2 86 39.5
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.8e-11 72.0 58 56.9
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.6e-10 70.1 100 46.0
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 1.3e-09 67.8 89 39.3
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.7e-09 66.2 50 58.0
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 3.2e-08 63.2 158 34.2
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.2e-07 61.2 44 59.1
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 4.6e-07 59.3 92 38.0
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 1.0e-06 58.2 90 33.3
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 1.3e-06 57.8 81 37.0
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 2.3e-06 57.0 81 35.8
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 2.3e-06 57.0 86 36.0
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 2.3e-06 57.0 85 35.3
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 2.3e-06 57.0 81 34.6
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 3.0e-06 56.6 90 33.3
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 33.3
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 3.0e-06 56.6 81 35.8
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 3.9e-06 56.2 93 32.3
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 3.9e-06 56.2 80 36.2
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 3.9e-06 56.2 115 37.4
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 35.8
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 33.3
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 3.9e-06 56.2 81 33.3
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 5.0e-06 55.8 83 33.7
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 5.0e-06 55.8 83 33.7
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 5.0e-06 55.8 83 33.7
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 5.0e-06 55.8 83 33.7
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 5.0e-06 55.8 83 33.7
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 5.0e-06 55.8 81 34.6
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 5.0e-06 55.8 81 33.3
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 5.0e-06 55.8 81 35.8
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 33.3
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 6.6e-06 55.5 80 33.8
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 6.6e-06 55.5 75 36.0
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 6.6e-06 55.5 84 32.1
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 33.3
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 33.3
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 6.6e-06 55.5 81 34.6
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 8.6e-06 55.1 80 35.0
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 34.6
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 8.6e-06 55.1 85 30.6
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 8.6e-06 55.1 81 33.3
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 8.6e-06 55.1 80 35.0


User provided reference genes

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