Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p12760 Brassica napus HOM05D008820 ORTHO05D011139 5.6e-86 320.9 156 100.0
C02p20010 Brassica napus HOM05D008820 ORTHO05D011139 2.0e-83 312.4 156 97.4
BolC3t20944H Brassica oleracea HOM05D008820 ORTHO05D011139 1.0e-79 300.1 144 99.3
BolC3t16052H Brassica oleracea HOM05D008820 ORTHO05D011139 8.6e-79 297.0 144 98.6
BcaC04g22692 Brassica carinata HOM05D008820 ORTHO05D011139 3.7e-53 211.8 140 72.1
C09p16490 Brassica napus HOM05D008820 ORTHO05D011139 3.7e-53 211.8 140 72.1
BolC9t54559H Brassica oleracea HOM05D008820 ORTHO05D011139 3.7e-53 211.8 140 72.1
A09p15380 Brassica napus HOM05D008820 ORTHO05D011139 1.1e-52 210.3 137 76.6
BraA09t37180Z Brassica rapa HOM05D008820 ORTHO05D011139 1.1e-52 210.3 137 76.6
C09p18650 Brassica napus HOM05D008820 ORTHO05D011139 2.4e-52 209.1 136 77.2
BcaNung06083 Brassica carinata HOM05D008820 ORTHO05D011139 6.9e-52 207.6 136 77.2
BolC9t54760H Brassica oleracea HOM05D008820 ORTHO05D011139 6.9e-52 207.6 136 77.2
A09p13800 Brassica napus HOM05D008820 ORTHO05D011139 1.5e-51 206.5 140 70.0
BcaB07g31557 Brassica carinata HOM05D008820 ORTHO05D011139 3.4e-51 205.3 145 69.7
BraA09t37032Z Brassica rapa HOM05D008820 ORTHO05D011139 9.9e-51 203.8 140 70.0
Sp2g00990 Schrenkiella parvula HOM05D008820 ORTHO05D011139 1.7e-50 203.0 141 72.3
Thhalv10023318m.g Eutrema salsugineum HOM05D008820 ORTHO05D011139 3.2e-49 198.7 142 68.3
CARHR047670 Cardamine hirsuta HOM05D008820 ORTHO05D011139 5.5e-49 198.0 142 68.3
AL2G11560 Arabidopsis lyrata HOM05D008820 ORTHO05D011139 1.2e-48 196.8 142 70.4
AT1G63670 Arabidopsis thaliana HOM05D008820 ORTHO05D011139 3.5e-48 195.3 142 69.7
Carub.0002s0118 Capsella rubella HOM05D008820 ORTHO05D011139 7.9e-48 194.1 156 63.5
Aa31LG2G880 Aethionema arabicum HOM05D008820 ORTHO05D011139 2.6e-43 179.1 160 59.4
THA.LOC104817974 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 3.4e-27 125.6 141 48.9
C07p02790 Brassica napus HOM05D008820 ORTHO05D011139 6.7e-23 111.3 62 85.5
THA.LOC104823587 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 5.7e-22 108.2 145 43.4
BcaC01g00975 Brassica carinata HOM05D008820 ORTHO05D011139 3.3e-14 82.4 41 100.0
BolC1t01424H Brassica oleracea HOM05D008820 ORTHO05D011139 7.4e-14 81.3 93 50.5
A07p03780 Brassica napus HOM05D008820 ORTHO05D011139 8.2e-13 77.8 43 83.7
BraA07t28167Z Brassica rapa HOM05D008820 ORTHO05D011139 8.2e-13 77.8 43 83.7
BraA07t28170Z Brassica rapa HOM05D008820 ORTHO05D011139 8.2e-13 77.8 43 83.7
BraA07t28172Z Brassica rapa HOM05D008820 ORTHO05D011139 8.2e-13 77.8 43 83.7
BraA06t24331Z Brassica rapa HOM05D008820 ORTHO05D011139 2.0e-11 73.2 41 82.9
BcaB05g22617 Brassica carinata HOM05D008820 ORTHO05D011139 7.7e-11 71.2 35 91.4
RcHm_v2.0_Chr7g0197501 Rosa chinensis HOM05D002082 ORTHO05D002130 8.5e-10 67.8 142 28.2
FAN13G1469 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.6e-08 63.5 142 26.1
Gohir.D08G201600 Gossypium hirsutum HOM05D002082 ORTHO05D011139 3.6e-08 62.4 128 27.3
Gorai.004G212500 Gossypium raimondii HOM05D002082 ORTHO05D011139 3.6e-08 62.4 128 27.3
Gohir.A08G183050 Gossypium hirsutum HOM05D002082 ORTHO05D011139 6.1e-08 61.6 128 25.8
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 6.7e-07 58.2 129 30.2
Manes.01G059400 Manihot esculenta HOM05D002082 ORTHO05D002130 1.2e-06 57.4 146 24.7
Thecc.03G279700 Theobroma cacao HOM05D002082 ORTHO05D002130 1.2e-06 57.4 139 27.3
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 1.5e-06 57.0 128 34.4
CANSAT21G1957 Cannabis sativa HOM05D002082 ORTHO05D002130 1.5e-06 57.0 132 31.8
CANSAT56G4299 Cannabis sativa HOM05D002082 ORTHO05D002130 1.5e-06 57.0 132 31.8
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 2.0e-06 56.6 128 32.8
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 2.6e-06 56.2 127 31.5
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 3.3e-06 55.8 130 33.8
Eucgr.E00627 Eucalyptus grandis HOM05D002082 ORTHO05D002130 4.4e-06 55.5 132 28.8
Cpa.g.sc74.55 Carica papaya HOM05D002082 ORTHO05D002130 7.5e-06 54.7 127 27.6
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 9.7e-06 54.3 125 28.8


User provided reference genes

Program Settings