Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p12720 Brassica napus HOM05D008010 ORTHO05D010085 5.1e-120 434.5 228 100.0
BcaC09g51471 Brassica carinata HOM05D008010 ORTHO05D010085 1.3e-115 419.9 228 96.5
BolC1t01249H Brassica oleracea HOM05D008010 ORTHO05D010085 1.5e-111 406.4 233 94.4
BraA01t01022Z Brassica rapa HOM05D008010 ORTHO05D010085 3.8e-91 338.6 232 83.2
A01p10760 Brassica napus HOM05D008010 ORTHO05D010085 8.4e-91 337.4 232 83.2
BcaNung05918 Brassica carinata HOM05D008010 ORTHO05D010085 2.2e-78 296.2 233 77.3
AT4G18740 Arabidopsis thaliana HOM05D008010 ORTHO05D010085 8.2e-54 214.5 249 59.0
Thhalv10026132m.g Eutrema salsugineum HOM05D008010 ORTHO05D010085 2.2e-46 189.9 231 55.4
AL7G35510 Arabidopsis lyrata HOM05D008010 ORTHO05D010085 8.3e-46 188.0 236 57.6
Sp7g17440 Schrenkiella parvula HOM05D008010 ORTHO05D010085 1.6e-41 173.7 229 53.3
CARHR225590 Cardamine hirsuta HOM05D008010 ORTHO05D010085 8.3e-38 161.4 221 53.4
Carub.0007s2250 Capsella rubella HOM05D008010 ORTHO05D010085 2.0e-28 130.2 179 51.4
Aa31LG6G1450 Aethionema arabicum HOM05D008010 ORTHO05D010085 6.6e-27 125.2 241 42.7
THA.LOC104806163 Tarenaya hassleriana HOM05D008010 ORTHO05D010085 1.6e-25 120.6 252 40.5
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 6.6e-19 98.6 201 38.8
Manes.16G041900 Manihot esculenta HOM05D008010 ORTHO05D010085 1.9e-18 97.1 218 41.7
Dinv12764 Davidia involucrata HOM05D008010 ORTHO05D010085 3.6e-17 92.8 214 37.4
GSVIVG01021245001 Vitis vinifera HOM05D008010 ORTHO05D010085 1.1e-16 91.3 216 38.9
Sabra11G0057100 Salix brachista HOM05D008010 ORTHO05D010085 1.4e-16 90.9 221 38.0
Cfa000638 Carpinus fangiana HOM05D008010 ORTHO05D010085 1.8e-16 90.5 168 44.6
Thecc.06G167300 Theobroma cacao HOM05D008010 ORTHO05D010085 3.1e-16 89.7 212 37.3
Haze_06192 Corylus avellana HOM05D008010 ORTHO05D010085 8.9e-16 88.2 168 44.0
DCAR_027988 Daucus carota HOM05D008010 ORTHO05D010085 8.9e-16 88.2 177 40.7
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 8.9e-16 88.2 170 40.0
Eucgr.D00477 Eucalyptus grandis HOM05D008010 ORTHO05D010085 1.5e-15 87.4 188 38.8
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 2.6e-15 86.7 207 38.2
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.4e-15 86.3 207 37.7
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.4e-15 86.3 164 43.9
AUR62039459 Chenopodium quinoa HOM05D008010 ORTHO05D010085 4.4e-15 85.9 170 34.1
Sed0009144 Sechium edule HOM05D008010 ORTHO05D010085 5.8e-15 85.5 194 38.1
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 5.8e-15 85.5 174 41.4
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 9.8e-15 84.7 170 41.2
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.7e-14 84.0 164 42.7
Nitab4.5_0008462g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 2.2e-14 83.6 181 38.1
Nn3g21124 Nelumbo nucifera HOM05D008010 ORTHO05D010085 3.7e-14 82.8 172 38.4
MELO3C002669.2 Cucumis melo HOM05D008010 ORTHO05D010085 4.9e-14 82.4 159 39.6
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 1.1e-13 81.3 202 35.6
Sopen02g021240 Solanum pennellii HOM05D008010 ORTHO05D010085 1.1e-13 81.3 163 40.5
Potri.004G059300 Populus trichocarpa HOM05D008010 ORTHO05D010085 1.4e-13 80.9 173 39.9
CiPaw.09G071800 Carya illinoinensis HOM05D008010 ORTHO05D010085 1.9e-13 80.5 181 39.8
Gohir.A06G132400 Gossypium hirsutum HOM05D008010 ORTHO05D010085 2.4e-13 80.1 174 35.6
Peaxi162Scf00371g00017 Petunia axillaris HOM05D008010 ORTHO05D010085 2.4e-13 80.1 183 38.8
Atru.chr10.1588_Atru.chr10.1589 Acer truncatum HOM05D008010 ORTHO05D010085 3.2e-13 79.7 201 36.3
RcHm_v2.0_Chr5g0011411 Rosa chinensis HOM05D008010 ORTHO05D010085 3.2e-13 79.7 219 34.7
Solyc02g072260.4 Solanum lycopersicum HOM05D008010 ORTHO05D010085 3.2e-13 79.7 172 40.1
Gorai.010G160200 Gossypium raimondii HOM05D008010 ORTHO05D010085 5.4e-13 79.0 173 34.1
Lsat_1_v5_gn_1_109280 Lactuca sativa HOM05D008010 ORTHO05D010085 9.2e-13 78.2 169 35.5
Nitab4.5_0002185g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 1.2e-12 77.8 181 37.6
ClCG03G007530 Citrullus lanatus HOM05D008010 ORTHO05D010085 1.6e-12 77.4 162 37.7
Prupe.4G065300 Prunus persica HOM05D008010 ORTHO05D010085 1.6e-12 77.4 178 37.6
Gohir.D06G137900 Gossypium hirsutum HOM05D008010 ORTHO05D010085 2.7e-12 76.6 174 33.9
Lj6g0013702 Lotus japonicus HOM05D008010 ORTHO05D010085 2.7e-12 76.6 165 37.6
EL10Ac8g20573 Beta vulgaris HOM05D008010 ORTHO05D010085 3.5e-12 76.3 176 33.5
CAN.G411.60 Capsicum annuum HOM05D008010 ORTHO05D010085 4.6e-12 75.9 248 32.7
AUR62027705 Chenopodium quinoa HOM05D008010 ORTHO05D010085 4.6e-12 75.9 170 31.8
MD05G1297000 Malus domestica HOM05D008010 ORTHO05D010085 7.8e-12 75.1 182 39.0
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-11 73.9 164 34.1
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.0e-11 73.2 178 35.4
Cpa.g.sc7.102 Carica papaya HOM05D008010 ORTHO05D010085 3.0e-11 73.2 164 42.7
Cc02_g15430 Coffea canephora HOM05D008010 ORTHO05D010085 3.9e-11 72.8 188 37.2
CDE03G0033 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 1.1e-10 71.2 195 36.4
CsaV3_1G033180 Cucumis sativus L. HOM05D008010 ORTHO05D010085 1.1e-10 71.2 175 34.3
Duzib160G0139 Durio zibethinus HOM05D008010 ORTHO05D010085 3.3e-10 69.7 207 34.8
Lalb_Chr18g0054681 Lupinus albus HOM05D008010 ORTHO05D010085 4.3e-10 69.3 180 34.4
arahy.Tifrunner.gnm1.ann1.42QDDD Arachis hypogaea HOM05D008010 ORTHO05D010085 1.6e-09 67.4 161 34.8
QL05p048352 Quercus lobata HOM05D008010 ORTHO05D010085 1.6e-09 67.4 203 33.5
COL.COLO4_31257 Corchorus olitorius HOM05D008010 ORTHO05D010085 4.7e-09 65.9 83 49.4
ECA248G1583 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.7e-09 65.9 178 31.5
SGA_v2.0_scaffold1G00067 Striga asiatica HOM05D008010 ORTHO05D010085 4.7e-09 65.9 209 34.0
arahy.Tifrunner.gnm1.ann1.NGY302 Arachis hypogaea HOM05D008010 ORTHO05D010085 8.1e-09 65.1 161 33.5
Ciclev10016384m.g Citrus clementina HOM05D008010 ORTHO05D010085 1.5e-07 60.8 156 36.5
MBI07_g09547_MAGBIO Magnolia biondii HOM05D008010 ORTHO05D010085 2.0e-07 60.5 82 46.3
ATR0127G032 Amborella trichopoda HOM05D008010 ORTHO05D010085 2.6e-07 60.1 207 30.9
ECA248G2359 Erigeron canadensis HOM05D008010 ORTHO05D010085 1.3e-06 57.8 152 32.9
unitig_85.g27297 Utricularia gibba HOM05D008010 ORTHO05D010085 4.9e-06 55.8 153 30.7


User provided reference genes

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