Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-286 988.4 550 100.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-280 968.0 550 97.1
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.0e-279 965.3 554 96.9
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.3e-278 962.6 550 97.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.1e-275 950.7 554 93.7
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-266 922.9 562 86.5
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 8.1e-265 916.8 554 93.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.7e-252 875.2 569 83.0
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 3.5e-252 874.8 571 81.4
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.9e-251 871.3 570 80.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.5e-250 869.4 570 84.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 5.6e-250 867.5 571 80.4
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 5.6e-250 867.5 571 80.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-249 866.3 571 81.3
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-249 865.1 571 80.2
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-248 862.1 569 79.8
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 9.0e-248 860.1 566 80.4
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.2e-246 855.5 554 84.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 6.5e-246 854.0 569 79.3
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 7.4e-242 840.5 565 79.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.0e-238 830.1 570 76.7
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 8.5e-238 827.0 569 78.0
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-231 806.6 565 76.8
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.0e-227 793.5 573 72.4
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-224 782.3 531 78.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 8.0e-212 740.7 402 94.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.9e-206 722.2 551 68.6
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.7e-204 715.7 556 66.9
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.8e-203 713.0 551 66.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 4.0e-203 711.8 552 66.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-202 710.3 549 67.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.4e-202 708.4 554 66.6
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.8e-201 705.7 552 66.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-200 703.7 564 65.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 5.4e-200 701.4 550 65.8
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 7.0e-200 701.0 552 66.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 9.1e-200 700.7 553 65.3
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.6e-199 699.9 553 65.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.7e-199 699.1 563 63.8
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 8.6e-198 694.1 384 91.1
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 7.2e-197 691.0 556 65.6
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.1e-196 688.0 545 65.7
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.8e-195 684.5 548 69.5
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-194 683.3 552 69.2
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 9.8e-194 680.6 548 64.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.2e-193 679.5 552 64.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.9e-193 678.3 551 68.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.3e-193 677.9 557 63.9
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 6.3e-193 677.9 557 63.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.2e-191 673.7 559 63.1
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 7.8e-191 671.0 555 62.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.7e-190 669.8 547 62.5
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.7e-190 669.8 552 63.6
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.6e-190 667.9 549 64.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.9e-189 666.4 553 64.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 3.3e-189 665.6 548 62.4
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.3e-189 665.6 553 62.7
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.5e-189 664.1 551 62.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.5e-189 664.1 551 62.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.8e-188 662.5 545 63.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.6e-188 662.1 564 61.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-187 660.6 556 63.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-187 659.1 557 63.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.0e-187 659.1 486 69.8
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 4.0e-187 658.7 554 65.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.6e-186 656.0 555 62.9
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.8e-186 654.1 561 62.4
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.3e-185 653.7 557 61.9
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.1e-184 650.6 548 61.3
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.4e-184 650.2 561 61.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.1e-184 648.7 556 61.3
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 9.2e-184 647.5 559 60.8
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-183 647.1 557 61.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.6e-183 646.7 550 62.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.0e-183 646.4 574 59.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-183 646.4 496 65.7
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-183 646.4 551 62.6
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-183 646.4 551 62.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.8e-183 644.4 554 63.2
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.6e-182 641.3 561 61.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 8.6e-182 641.0 556 60.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 5.6e-181 638.3 548 60.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.6e-180 636.7 433 72.7
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.4e-179 633.6 561 60.2
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.9e-179 630.9 556 60.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 7.5e-178 627.9 553 59.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.3e-177 627.1 552 61.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-177 626.7 514 63.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.1e-176 622.1 549 61.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.0e-175 619.8 550 59.6
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.7e-175 619.4 549 60.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 3.5e-175 619.0 543 59.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.0e-174 615.9 549 60.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-174 615.5 550 59.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.6e-174 614.4 435 67.6
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 7.3e-173 611.3 551 59.7
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.2e-172 610.5 552 59.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.1e-171 607.4 561 56.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.2e-171 605.1 431 68.7
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 8.9e-171 604.4 558 57.5
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.1e-168 597.4 548 58.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-168 596.3 413 70.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.6e-167 592.0 472 74.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.8e-167 591.3 435 68.5
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-164 583.9 547 57.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.8e-164 582.8 435 65.1
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 6.2e-164 581.6 554 59.6
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 8.9e-163 577.8 554 59.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.5e-162 577.0 560 55.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-160 570.1 579 54.4
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.5e-157 559.7 553 57.0
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.6e-156 555.8 557 58.3
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.9e-153 545.4 563 54.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 8.4e-153 544.7 580 56.4
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-151 540.8 558 56.3
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.6e-150 535.0 339 75.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.3e-149 532.7 549 55.6
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 6.9e-147 525.0 556 54.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-145 520.4 551 53.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.3e-141 505.8 552 51.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 7.6e-138 495.0 556 52.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-134 484.2 534 53.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.6e-132 477.2 506 50.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.8e-132 476.5 302 74.8
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.4e-128 464.2 544 51.1
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.9e-125 453.8 431 51.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.1e-103 379.0 365 50.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-93 348.2 395 50.9
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.6e-87 326.6 391 49.1
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 8.8e-86 322.0 486 43.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.2e-84 317.4 311 58.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.1e-83 313.2 199 74.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.7e-74 283.9 256 59.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.9e-73 280.4 211 62.6
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.9e-73 280.4 359 46.5
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.8e-62 242.7 156 73.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.8e-55 220.7 191 56.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 7.3e-48 196.1 269 49.1
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.8e-39 167.5 169 60.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-38 164.5 206 52.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 9.3e-35 152.5 289 38.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 6.6e-33 146.4 491 27.5
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 6.4e-28 129.8 92 67.4
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 8.4e-28 129.4 93 66.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.2e-19 100.5 152 44.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.5e-19 100.1 181 30.4
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.0e-18 96.7 79 60.8
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 5.1e-17 93.6 116 44.8
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.4e-16 89.7 71 62.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 9.6e-16 89.4 70 62.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-15 89.0 51 82.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-15 88.6 71 60.6
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.5e-13 80.5 78 53.8
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 3.8e-12 77.4 74 54.1
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-07 62.0 50 58.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.8e-07 61.2 129 34.9


User provided reference genes

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