Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p12030 Brassica napus HOM05D000222 ORTHO05D032004 1.2e-30 136.0 76 100.0
BolC1t01177H Brassica oleracea HOM05D000222 ORTHO05D032004 1.2e-30 136.0 76 100.0
BcaC09g51542 Brassica carinata HOM05D000222 ORTHO05D032004 8.9e-29 129.8 73 98.6
BcaB04g19554 Brassica carinata HOM05D000222 ORTHO05D003997 3.8e-11 71.2 56 75.0
A09p04330 Brassica napus HOM05D000222 ORTHO05D003997 3.8e-11 71.2 56 75.0
C09p04640 Brassica napus HOM05D000222 ORTHO05D003997 3.8e-11 71.2 56 75.0
Sp2g18560 Schrenkiella parvula HOM05D000222 ORTHO05D003997 3.8e-11 71.2 56 75.0
CARHR184180 Cardamine hirsuta HOM05D000222 ORTHO05D003997 8.4e-11 70.1 56 73.2
Thhalv10003897m.g Eutrema salsugineum HOM05D000222 ORTHO05D003997 8.4e-11 70.1 56 73.2
Carub.0002s0065 Capsella rubella HOM05D000222 ORTHO05D003997 1.4e-10 69.3 53 77.4
AL8G20820 Arabidopsis lyrata HOM05D000222 ORTHO05D003997 1.9e-10 68.9 51 80.4
Cpa.g.sc136.23 Carica papaya HOM05D000222 ORTHO05D003997 3.2e-10 68.2 56 71.4
THA.LOC104826656 Tarenaya hassleriana HOM05D000222 ORTHO05D003997 5.4e-10 67.4 54 72.2
Potri.014G164800 Populus trichocarpa HOM05D000222 ORTHO05D003997 7.1e-10 67.0 56 69.6
Gohir.D07G196800 Gossypium hirsutum HOM05D000222 ORTHO05D003997 9.2e-10 66.6 53 75.5
Gorai.001G220500 Gossypium raimondii HOM05D000222 ORTHO05D003997 9.2e-10 66.6 53 75.5
Gohir.A07G190500 Gossypium hirsutum HOM05D000222 ORTHO05D003997 1.2e-09 66.2 51 78.4
Potri.002G221500 Populus trichocarpa HOM05D000222 ORTHO05D003997 2.7e-09 65.1 56 67.9
SHI10138 Sapria himalayana HOM05D000222 ORTHO05D003997 2.7e-09 65.1 57 68.4
CiPaw.04G196200 Carya illinoinensis HOM05D000222 ORTHO05D003997 3.5e-09 64.7 56 67.9
Manes.12G061500 Manihot esculenta HOM05D000222 ORTHO05D003997 3.5e-09 64.7 56 66.1
Manes.13G063900 Manihot esculenta HOM05D000222 ORTHO05D003997 3.5e-09 64.7 56 66.1
Sabra14G0125500 Salix brachista HOM05D000222 ORTHO05D003997 3.5e-09 64.7 56 67.9
TWI18G0788 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 3.5e-09 64.7 56 66.1
Gohir.D07G092800 Gossypium hirsutum HOM05D000222 ORTHO05D003997 4.6e-09 64.3 56 67.9
Gorai.001G099400 Gossypium raimondii HOM05D000222 ORTHO05D003997 6.0e-09 63.9 56 67.9
TWI36G1024 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 6.0e-09 63.9 56 66.1
MBI19_g25587_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D003997 1.3e-08 62.8 56 66.1
TWI75G1713 Tripterygium wilfordii HOM05D000222 ORTHO05D003997 1.3e-08 62.8 54 66.7
PGR042G0083 Punica granatum HOM05D000222 ORTHO05D003997 1.7e-08 62.4 56 62.5
Aqoxy4G02226 Aquilegia oxysepala HOM05D000222 ORTHO05D003997 2.3e-08 62.0 56 66.1
Ciclev10014794m.g Citrus clementina HOM05D000222 ORTHO05D003997 2.3e-08 62.0 56 66.1
CSS0026317 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 3.0e-08 61.6 54 64.8
TAR629G0719 Trochodendron aralioides HOM05D000222 ORTHO05D003997 3.0e-08 61.6 56 67.9
Gohir.A07G087900 Gossypium hirsutum HOM05D000222 ORTHO05D003997 3.9e-08 61.2 56 66.1
Sabra02G0169300 Salix brachista HOM05D000222 ORTHO05D003997 3.9e-08 61.2 56 64.3
Ah.01g013870 Amaranthus hybridus HOM05D000222 ORTHO05D003997 6.6e-08 60.5 66 57.6
Glyma.13G025900 Glycine max HOM05D000222 ORTHO05D003997 6.6e-08 60.5 56 64.3
AUR62029084 Chenopodium quinoa HOM05D000222 ORTHO05D003997 8.7e-08 60.1 56 62.5
Eucgr.A01043 Eucalyptus grandis HOM05D000222 ORTHO05D003997 8.7e-08 60.1 62 61.3
TAR626G0385 Trochodendron aralioides HOM05D000222 ORTHO05D003997 8.7e-08 60.1 56 62.5
EL10Ac9g22704 Beta vulgaris HOM05D000222 ORTHO05D003997 1.1e-07 59.7 56 62.5
Lj6g0017172 Lotus japonicus HOM05D000222 ORTHO05D003997 1.1e-07 59.7 56 64.3
MBI16_g26374_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D003997 1.1e-07 59.7 56 62.5
Nn1g03230 Nelumbo nucifera HOM05D000222 ORTHO05D003997 1.1e-07 59.7 56 64.3
Peaxi162Scf00776g00115 Petunia axillaris HOM05D000222 ORTHO05D003997 1.5e-07 59.3 60 60.0
CiPaw.03G278700 Carya illinoinensis HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 62.5
Dinv05353 Davidia involucrata HOM05D000222 ORTHO05D000329 1.9e-07 58.9 56 64.3
Duzib211G0478 Durio zibethinus HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 64.3
Hma1.2p1_1267F.1_g271520 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 62.5
Hma1.2p1_2614F.1_g325420 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 62.5
Solyc07g047780.3 Solanum lycopersicum HOM05D000222 ORTHO05D003997 1.9e-07 58.9 72 54.2
Sopen07g024220 Solanum pennellii HOM05D000222 ORTHO05D003997 1.9e-07 58.9 72 54.2
PGSC0003DMG400006146 Solanum tuberosum HOM05D000222 ORTHO05D003997 1.9e-07 58.9 72 54.2
TAR624G0367 Trochodendron aralioides HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 64.3
VMungo0540G0259 Vigna mungo HOM05D000222 ORTHO05D003997 1.9e-07 58.9 56 60.7
Prupe.3G201500 Prunus persica HOM05D000222 ORTHO05D003997 3.3e-07 58.2 56 58.9
AUR62015028 Chenopodium quinoa HOM05D000222 ORTHO05D003997 5.6e-07 57.4 56 58.9
Nitab4.5_0001774g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 5.6e-07 57.4 72 52.8
CDE10G0307 Ceratophyllum demersum HOM05D000222 ORTHO05D003997 7.3e-07 57.0 73 52.1
ECA248G0145 Erigeron canadensis HOM05D000222 ORTHO05D003997 7.3e-07 57.0 56 62.5
Glyma.20G059100 Glycine max HOM05D000222 ORTHO05D003997 7.3e-07 57.0 56 60.7
HanXRQChr01g0004781 Helianthus annuus HOM05D000222 ORTHO05D003997 7.3e-07 57.0 56 62.5
Nitab4.5_0001741g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 7.3e-07 57.0 60 61.7
PGSC0003DMG400018835 Solanum tuberosum HOM05D000222 ORTHO05D017589 7.3e-07 57.0 56 60.7
CAN.G1397.1 Capsicum annuum HOM05D000222 ORTHO05D003997 9.6e-07 56.6 72 52.8
Phvul.006G012000 Phaseolus vulgaris HOM05D000222 ORTHO05D003997 9.6e-07 56.6 56 58.9
Dinv04410 Davidia involucrata HOM05D000222 ORTHO05D003997 1.2e-06 56.2 56 58.9
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 1.6e-06 55.8 56 58.9
Oeu030106.1 Olea europaea HOM05D000222 ORTHO05D003997 1.6e-06 55.8 56 57.1
Oeu057039.1 Olea europaea HOM05D000222 ORTHO05D003997 1.6e-06 55.8 56 57.1
SGA_v2.0_scaffold7G03719 Striga asiatica HOM05D000222 ORTHO05D003997 1.6e-06 55.8 56 57.1
Hma1.2p1_0657F.1_g196950 Hydrangea macrophylla HOM05D000222 ORTHO05D003997 2.1e-06 55.5 56 58.9
MSTRG.13112 Avicennia marina HOM05D000222 ORTHO05D003997 2.8e-06 55.1 54 57.4
DCAR_019236 Daucus carota HOM05D000222 ORTHO05D003997 2.8e-06 55.1 56 60.7
Lj2A259T35 Lonicera japonica HOM05D000222 ORTHO05D003997 3.6e-06 54.7 54 59.3
Nitab4.5_0008857g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 3.6e-06 54.7 56 58.9
Peaxi162Scf00576g00210 Petunia axillaris HOM05D000222 ORTHO05D003997 3.6e-06 54.7 56 58.9
Rhsim13G0143100 Rhododendron simsii HOM05D000222 ORTHO05D003997 3.6e-06 54.7 56 58.9
Migut.M01425 Erythranthe guttata HOM05D000222 ORTHO05D003997 4.7e-06 54.3 56 53.6
Lsat_1_v5_gn_0_32421 Lactuca sativa HOM05D000222 ORTHO05D003997 4.7e-06 54.3 62 58.1
Nitab4.5_0002478g0010 Nicotiana tabacum HOM05D000222 ORTHO05D003997 4.7e-06 54.3 56 58.9
CSS0045294 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 6.2e-06 53.9 54 59.3
Migut.H01619 Erythranthe guttata HOM05D000222 ORTHO05D003997 6.2e-06 53.9 56 55.4
Os12g0514400 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D003997 6.2e-06 53.9 56 55.4
CSS0029369 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 8.1e-06 53.5 56 57.1
MELO3C024108.2 Cucumis melo HOM05D000222 ORTHO05D003997 8.1e-06 53.5 56 53.6
CsaV3_7G002650 Cucumis sativus L. HOM05D000222 ORTHO05D003997 8.1e-06 53.5 56 53.6
Hund12532 Selenicereus undatus HOM05D000222 ORTHO05D003997 8.1e-06 53.5 56 55.4


User provided reference genes

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