Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 7.9e-71 271.2 244 100.0
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 4.5e-66 255.4 246 94.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 4.2e-64 248.8 247 96.0
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 8.5e-57 224.6 153 84.3
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.5e-56 223.0 153 83.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 8.0e-55 218.0 153 86.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 3.6e-47 192.6 185 65.4
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 3.4e-45 186.0 184 69.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.7e-44 183.7 185 66.5
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 4.8e-44 182.2 181 70.2
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.8e-43 180.3 181 69.6
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.0e-41 174.5 183 66.7
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.7e-41 173.7 181 66.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.1e-40 171.0 186 64.5
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 4.2e-40 169.1 192 65.1
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.7e-39 165.6 182 64.8
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 1.0e-38 164.5 181 64.6
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 4.0e-38 162.5 183 64.5
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.1e-31 140.2 187 48.7
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.0e-30 137.9 187 49.2
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 2.1e-18 97.1 188 45.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.7e-17 94.0 192 39.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 3.9e-17 92.8 190 38.9
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.3e-16 89.7 165 41.2
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.3e-16 89.7 167 45.5
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.3e-16 89.4 202 38.1
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.3e-16 89.4 196 38.3
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 9.5e-16 88.2 202 40.6
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.2e-15 87.8 183 39.3
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.2e-15 87.8 190 35.3
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-15 87.4 190 36.3
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.1e-15 87.0 218 34.9
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.6e-15 86.3 190 36.3
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.6e-15 86.3 186 36.6
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 4.7e-15 85.9 190 41.6
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 8.1e-15 85.1 199 33.2
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.1e-14 83.2 192 34.9
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 5.2e-14 82.4 201 39.8
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 6.8e-14 82.0 208 34.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 6.8e-14 82.0 173 36.4
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 8.9e-14 81.6 200 35.5
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 2.0e-13 80.5 214 36.4
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.6e-13 80.1 187 36.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 3.4e-13 79.7 198 37.4
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 3.4e-13 79.7 189 35.4
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.4e-13 79.7 206 33.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 4.9e-12 75.9 204 35.8
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 4.9e-12 75.9 207 32.9
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.9e-12 75.9 193 37.8
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 8.3e-12 75.1 168 36.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 8.3e-12 75.1 168 36.9
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.1e-11 74.7 206 33.0
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.1e-11 74.7 163 34.4
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.4e-11 74.3 182 39.0
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.4e-11 74.3 205 32.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.4e-11 73.6 205 32.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.4e-11 73.6 176 35.8
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 5.4e-11 72.4 168 38.7
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 7.1e-11 72.0 159 37.7
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 9.2e-11 71.6 193 39.4
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.6e-10 70.9 174 42.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-10 70.9 205 30.7
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.1e-10 70.5 197 33.0
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 6.0e-10 68.9 159 37.1
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 7.8e-10 68.6 194 34.0
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.0e-09 68.2 161 35.4
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 183 33.3
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.0e-09 68.2 159 34.6
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.0e-09 68.2 167 35.3
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 3.9e-09 66.2 159 34.6
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.9e-09 66.2 124 37.1
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.6e-09 65.5 158 34.2
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.6e-09 65.5 159 34.0
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.6e-09 65.1 159 34.0
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 8.6e-09 65.1 172 32.6
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 8.6e-09 65.1 101 45.5
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.1e-08 64.7 175 34.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.9e-08 63.9 124 37.1
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 2.5e-08 63.5 160 40.6
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.5e-08 63.5 135 43.7
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.5e-08 63.5 105 39.0
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 3.3e-08 63.2 168 32.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 4.3e-08 62.8 193 34.7
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 5.6e-08 62.4 182 33.0
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 5.6e-08 62.4 186 31.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.3e-08 62.0 216 35.2
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 9.5e-08 61.6 164 42.1
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 9.5e-08 61.6 101 40.6
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 9.5e-08 61.6 171 31.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 9.5e-08 61.6 222 30.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.2e-07 61.2 181 32.0
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.2e-07 61.2 39 71.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.2e-07 61.2 189 38.1
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.2e-07 61.2 216 33.8
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.6e-07 60.8 160 36.2
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.1e-07 60.5 39 71.8
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 2.1e-07 60.5 222 29.7
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 8.1e-07 58.5 66 42.4
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 8.1e-07 58.5 211 31.8
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 8.1e-07 58.5 214 30.4
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 8.1e-07 58.5 179 30.2
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.1e-06 58.2 132 44.7
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.4e-06 57.8 40 65.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 6.8e-06 55.5 184 28.8
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 8.9e-06 55.1 216 29.6


User provided reference genes

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