Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 4.5e-145 518.1 292 100.0
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 9.3e-143 510.4 292 98.6
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 7.4e-140 500.7 292 97.6
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 6.3e-131 471.1 296 93.6
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 3.4e-129 465.3 297 92.3
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 5.3e-122 441.4 298 87.6
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 1.8e-117 426.4 282 87.9
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 4.1e-114 415.2 279 87.5
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 3.4e-113 412.1 287 84.3
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 1.7e-112 409.8 294 82.3
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 3.6e-110 402.1 288 83.0
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 5.2e-85 318.5 226 82.3
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 5.9e-73 278.5 294 62.6
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 4.4e-68 262.3 296 60.5
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 5.6e-55 218.8 294 50.3
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 7.3e-55 218.4 294 50.3
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.6e-54 217.2 294 50.3
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 2.1e-54 216.9 320 47.5
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 2.1e-54 216.9 321 47.7
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 8.1e-54 214.9 294 48.6
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 5.2e-53 212.2 310 46.1
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 3.4e-52 209.5 305 48.5
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 9.9e-52 208.0 272 49.3
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.7e-51 207.2 292 47.9
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 2.2e-51 206.8 321 46.7
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 2.9e-51 206.5 318 45.6
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 4.9e-51 205.7 295 47.8
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 1.1e-50 204.5 310 46.1
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 2.4e-50 203.4 325 44.6
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 5.4e-50 202.2 292 46.9
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 2.1e-49 200.3 313 46.0
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 6.0e-49 198.7 288 48.3
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 6.0e-49 198.7 292 47.3
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 6.0e-49 198.7 319 46.7
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.3e-48 197.6 281 49.8
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 1.7e-48 197.2 309 45.6
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 2.3e-48 196.8 284 49.3
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 3.0e-48 196.4 315 43.8
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 3.0e-48 196.4 291 47.1
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 3.9e-48 196.1 297 48.5
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 6.6e-48 195.3 297 49.5
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 6.6e-48 195.3 295 49.2
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 1.1e-47 194.5 295 45.8
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 1.9e-47 193.7 314 46.2
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 1.9e-47 193.7 294 46.9
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 4.3e-47 192.6 307 45.9
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 7.3e-47 191.8 291 45.7
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 2.8e-46 189.9 316 45.6
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 8.1e-46 188.3 283 46.6
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 1.1e-45 188.0 289 47.1
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 1.8e-45 187.2 320 44.7
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 2.4e-45 186.8 295 46.4
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 2.4e-45 186.8 301 44.9
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 4.0e-45 186.0 312 45.8
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 6.9e-45 185.3 313 44.4
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 1.5e-44 184.1 286 46.5
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 3.4e-44 183.0 290 45.2
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 7.6e-44 181.8 321 42.1
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 1.3e-43 181.0 308 45.8
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 3.8e-43 179.5 285 44.9
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 6.4e-43 178.7 296 45.3
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 1.4e-42 177.6 304 45.1
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 3.2e-42 176.4 294 43.9
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 1.6e-41 174.1 310 44.2
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 1.0e-40 171.4 278 46.8
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 5.1e-40 169.1 286 43.4
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 4.3e-39 166.0 245 47.3
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 9.6e-39 164.9 291 44.7
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 2.1e-38 163.7 279 45.5
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 1.2e-36 157.9 288 41.7
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.5e-36 157.5 248 42.3
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 5.8e-36 155.6 289 43.6
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.3e-35 154.5 247 41.7
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 2.4e-34 150.2 257 42.0
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.4e-34 150.2 248 38.7
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 3.2e-34 149.8 297 41.1
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 4.2e-34 149.4 265 46.8
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 1.2e-33 147.9 251 42.2
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 1.2e-33 147.9 313 38.0
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 4.6e-33 146.0 313 40.9
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 4.6e-33 146.0 313 40.9
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 3.0e-32 143.3 257 42.4
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 2.5e-31 140.2 213 47.9
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 8.1e-30 135.2 288 39.2
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 8.1e-30 135.2 223 41.3
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.4e-29 133.7 273 40.3
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 5.3e-29 132.5 314 38.2
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 6.9e-29 132.1 278 38.1
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 1.5e-28 131.0 230 42.2
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 3.4e-28 129.8 259 42.9
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 9.9e-28 128.3 247 40.1
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 5.5e-26 122.5 235 40.9
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 2.7e-25 120.2 247 42.5
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 3.9e-24 116.3 219 43.4
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 1.5e-23 114.4 256 35.2
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 7.4e-23 112.1 274 36.5
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 2.1e-22 110.5 79 70.9
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 1.4e-18 97.8 150 40.0
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 4.2e-18 96.3 217 36.4
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 8.7e-16 88.6 119 42.9
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 1.1e-15 88.2 273 28.9
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 1.5e-15 87.8 158 36.7
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 5.7e-15 85.9 159 37.1
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 2.8e-14 83.6 67 70.1
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 2.8e-14 83.6 291 32.0
BcaC03g14076 Brassica carinata HOM05D006859 ORTHO05D007990 3.1e-13 80.1 74 64.9
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 1.7e-11 74.3 152 43.4
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 7.2e-10 68.9 268 29.1
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 4.3e-07 59.7 78 42.3
CBR_g52283 Chara braunii HOM05D006859 ORTHO05D007990 2.8e-06 57.0 314 29.6
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 2.8e-06 57.0 260 31.9


User provided reference genes

Program Settings