Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p10680 Brassica napus HOM05D005627 ORTHO05D011792 1.0e-72 276.6 135 100.0
BcaC05g27915 Brassica carinata HOM05D005627 ORTHO05D011792 2.4e-21 105.9 60 76.7
C04p12610 Brassica napus HOM05D005627 ORTHO05D011792 4.2e-21 105.1 67 68.7
BcaC02g11662 Brassica carinata HOM05D005627 ORTHO05D011792 1.2e-20 103.6 67 67.2
BcaB05g23054 Brassica carinata HOM05D005627 ORTHO05D011792 2.1e-20 102.8 60 75.0
BcaC05g27914 Brassica carinata HOM05D005627 ORTHO05D011792 6.0e-20 101.3 60 73.3
C09p37890 Brassica napus HOM05D013280 ORTHO05D011792 2.3e-19 99.4 60 70.0
C07p07500 Brassica napus HOM05D013280 ORTHO05D011792 5.8e-15 84.7 53 69.8
BcaC06g36127 Brassica carinata HOM05D013280 ORTHO05D011792 1.6e-12 76.6 44 75.0
A07p31520 Brassica napus HOM05D008838 ORTHO05D028150 7.9e-12 74.3 60 48.3
C07p34790 Brassica napus HOM05D008838 ORTHO05D028150 3.0e-11 72.4 60 48.3
A10p17400 Brassica napus HOM05D008838 ORTHO05D028150 8.7e-11 70.9 60 46.7
BolC8t49548H Brassica oleracea HOM05D008838 ORTHO05D011792 1.9e-10 69.7 60 45.0
BolC7t44007H Brassica oleracea HOM05D005627 ORTHO05D028150 7.4e-10 67.8 60 45.0
BraA02t06823Z Brassica rapa HOM05D005627 ORTHO05D011792 7.4e-10 67.8 60 53.3
BraA09t41982Z Brassica rapa HOM05D005627 ORTHO05D011792 7.4e-10 67.8 60 53.3
BolC4t22910H Brassica oleracea HOM05D005627 ORTHO05D011792 1.6e-09 66.6 67 49.3
BcaC06g36744 Brassica carinata HOM05D008838 ORTHO05D011792 2.1e-09 66.2 60 46.7
BolC9t58939H Brassica oleracea HOM05D008838 ORTHO05D011792 2.8e-09 65.9 60 45.0
BraA08t34214Z Brassica rapa HOM05D008838 ORTHO05D021837 2.8e-09 65.9 66 42.4
C02p52110 Brassica napus HOM05D005627 ORTHO05D040212 4.8e-09 65.1 59 49.2
BolC2t11295H Brassica oleracea HOM05D005627 ORTHO05D040212 4.8e-09 65.1 59 49.2
BcaC05g27687 Brassica carinata HOM05D005627 ORTHO05D021837 6.2e-09 64.7 63 41.3
C05p36670 Brassica napus HOM05D008838 ORTHO05D017578 6.2e-09 64.7 63 41.3
BcaC08g44143 Brassica carinata HOM05D008838 ORTHO05D011792 8.2e-09 64.3 60 40.0
BraA06t24543Z Brassica rapa HOM05D005627 ORTHO05D027884 8.2e-09 64.3 60 41.7
BcaC01g03468 Brassica carinata HOM05D008384 ORTHO05D009842 1.4e-08 63.5 63 41.3
C05p48960 Brassica napus HOM05D008838 ORTHO05D017578 1.8e-08 63.2 63 39.7
BolC5t33636H Brassica oleracea HOM05D008838 ORTHO05D021837 1.8e-08 63.2 63 39.7
BraA04t16529Z Brassica rapa HOM05D015892 ORTHO05D009842 1.8e-08 63.2 63 39.7
BcaB01g04195 Brassica carinata HOM05D009418 ORTHO05D018626 2.4e-08 62.8 60 41.7
BcaB05g22096 Brassica carinata HOM05D009418 ORTHO05D011792 2.4e-08 62.8 60 41.7
BcaC05g24337 Brassica carinata HOM05D009418 ORTHO05D011792 2.4e-08 62.8 60 41.7
BolC5t32399H Brassica oleracea HOM05D008838 ORTHO05D021837 2.4e-08 62.8 63 39.7
A03p31870 Brassica napus HOM05D005627 ORTHO05D027884 3.1e-08 62.4 60 40.0
A03p51090 Brassica napus HOM05D008838 ORTHO05D039997 3.1e-08 62.4 60 40.0
C06p38200 Brassica napus HOM05D005627 ORTHO05D011976 3.1e-08 62.4 63 41.3
C06p00830 Brassica napus HOM05D008384 ORTHO05D009842 4.0e-08 62.0 63 39.7
C07p60290 Brassica napus HOM05D015892 ORTHO05D009842 4.0e-08 62.0 106 34.9
BcaC01g04977 Brassica carinata HOM05D015892 ORTHO05D009842 5.3e-08 61.6 63 39.7
C04p42370 Brassica napus HOM05D015892 ORTHO05D009842 5.3e-08 61.6 63 38.1
C03p31500 Brassica napus HOM05D015892 ORTHO05D009842 6.9e-08 61.2 103 34.0
BolC7t41682H Brassica oleracea HOM05D005627 ORTHO05D011976 6.9e-08 61.2 63 39.7
C07p12180 Brassica napus HOM05D005627 ORTHO05D011976 9.0e-08 60.8 63 38.1
BcaB02g10993 Brassica carinata HOM05D005627 ORTHO05D013519 1.2e-07 60.5 66 37.9
BcaB03g14887 Brassica carinata HOM05D008384 ORTHO05D009842 1.2e-07 60.5 63 34.9
C03p24860 Brassica napus HOM05D008384 ORTHO05D009842 1.2e-07 60.5 68 38.2
BolC2t07876H Brassica oleracea HOM05D008384 ORTHO05D009842 1.2e-07 60.5 63 33.3
BolC6t38917H Brassica oleracea HOM05D005627 ORTHO05D013519 1.5e-07 60.1 60 36.7
BcaB01g00831 Brassica carinata HOM05D005627 ORTHO05D009842 2.0e-07 59.7 63 34.9
BcaB05g24894 Brassica carinata HOM05D008384 ORTHO05D009842 2.0e-07 59.7 63 34.9
BcaC05g27033 Brassica carinata HOM05D005627 ORTHO05D031886 2.0e-07 59.7 63 36.5
C05p28910 Brassica napus HOM05D005627 ORTHO05D031886 2.0e-07 59.7 63 36.5
C06p06910 Brassica napus HOM05D005627 ORTHO05D013519 2.0e-07 59.7 60 40.0
BolC5t31612H Brassica oleracea HOM05D005627 ORTHO05D031886 2.0e-07 59.7 63 36.5
BraSC36t46060Z Brassica rapa HOM05D005627 ORTHO05D042212 2.0e-07 59.7 60 40.0
BcaB03g15637 Brassica carinata HOM05D009418 ORTHO05D027366 2.6e-07 59.3 60 36.7
C07p12150 Brassica napus HOM05D005627 ORTHO05D011976 3.4e-07 58.9 63 38.1
C07p35890 Brassica napus HOM05D008384 ORTHO05D016044 3.4e-07 58.9 63 38.1
A05p27890 Brassica napus HOM05D005627 ORTHO05D028293 4.5e-07 58.5 60 41.7
C07p21860 Brassica napus HOM05D006289 ORTHO05D009842 4.5e-07 58.5 63 38.1
SpUn0001_0070 Schrenkiella parvula HOM05D008384 ORTHO05D009842 4.5e-07 58.5 58 37.9
BolC7t41649H Brassica oleracea HOM05D005627 ORTHO05D027884 5.8e-07 58.2 51 45.1
BcaB08g34566 Brassica carinata HOM05D005627 ORTHO05D009842 1.0e-06 57.4 60 35.0
BcaB01g01859 Brassica carinata HOM05D005627 ORTHO05D013519 1.3e-06 57.0 55 38.2
BcaB04g18138 Brassica carinata HOM05D005627 ORTHO05D013519 1.3e-06 57.0 60 40.0
BraA10t42593Z Brassica rapa HOM05D006289 ORTHO05D009842 1.3e-06 57.0 61 37.7
BcaB01g01348 Brassica carinata HOM05D008838 ORTHO05D021876 1.7e-06 56.6 60 35.0
BcaB04g17340 Brassica carinata HOM05D009418 ORTHO05D009842 1.7e-06 56.6 60 36.7
BcaB05g23720 Brassica carinata HOM05D008384 ORTHO05D009842 1.7e-06 56.6 68 33.8
C07p12160 Brassica napus HOM05D005627 ORTHO05D013519 2.2e-06 56.2 60 33.3
BolC7t41687H Brassica oleracea HOM05D005627 ORTHO05D013519 2.2e-06 56.2 60 33.3
Sp4g09860 Schrenkiella parvula HOM05D005627 ORTHO05D011792 2.2e-06 56.2 45 53.3
BcaB01g01914 Brassica carinata HOM05D005627 ORTHO05D009842 2.9e-06 55.8 76 30.3
BolC9t56622H Brassica oleracea HOM05D013280 ORTHO05D011792 2.9e-06 55.8 55 49.1
BolC9t55516H Brassica oleracea HOM05D005627 ORTHO05D013519 3.8e-06 55.5 55 36.4
BraA03t09393Z Brassica rapa HOM05D006289 ORTHO05D016037 3.8e-06 55.5 63 36.5
BcaB01g01826 Brassica carinata HOM05D009418 ORTHO05D092826 4.9e-06 55.1 60 36.7
BcaB04g19900 Brassica carinata HOM05D009418 ORTHO05D011792 4.9e-06 55.1 60 36.7
BcaB05g23461 Brassica carinata HOM05D009418 ORTHO05D011792 4.9e-06 55.1 60 36.7
A02p12540 Brassica napus HOM05D006289 ORTHO05D009842 4.9e-06 55.1 61 36.1
A05p28230 Brassica napus HOM05D006289 ORTHO05D009842 4.9e-06 55.1 61 36.1
C07p12190 Brassica napus HOM05D005627 ORTHO05D013519 4.9e-06 55.1 60 33.3
BolC7t41685H Brassica oleracea HOM05D005627 ORTHO05D011976 4.9e-06 55.1 63 38.1
BraA05t20012Z Brassica rapa HOM05D005627 ORTHO05D021730 4.9e-06 55.1 60 36.7
BraA05t21704Z Brassica rapa HOM05D006289 ORTHO05D009842 4.9e-06 55.1 61 36.1
BraA10t43450Z Brassica rapa HOM05D006289 ORTHO05D009842 4.9e-06 55.1 61 36.1
BcaB07g31665 Brassica carinata HOM05D008384 ORTHO05D009842 6.5e-06 54.7 63 33.3
BolC7t42041H Brassica oleracea HOM05D006289 ORTHO05D016037 8.4e-06 54.3 63 34.9


User provided reference genes

Program Settings