Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 7.8e-133 477.2 260 100.0
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-90 336.3 326 62.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.7e-26 122.9 184 46.2
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 5.6e-14 82.4 97 42.3
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 9.5e-14 81.6 111 44.1
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 1.6e-13 80.9 144 37.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.6e-13 79.7 92 43.5
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 2.2e-10 70.5 91 36.3
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.7e-10 69.7 38 92.1
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 3.7e-10 69.7 38 92.1
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 4.9e-10 69.3 35 94.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 6.4e-10 68.9 35 91.4
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.4e-10 68.9 35 94.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 6.4e-10 68.9 35 94.3
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 8.3e-10 68.6 35 94.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 9.2e-09 65.1 38 86.8
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.7e-08 63.5 35 91.4
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.0e-07 61.6 141 29.8
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.3e-07 61.2 35 80.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.3e-07 61.2 35 80.0
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.3e-07 61.2 35 88.6
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.7e-07 60.8 35 80.0
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 1.7e-07 60.8 35 80.0
CSS0044835 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D017532 3.0e-07 60.1 49 53.1
CAN.G1823.3 Capsicum annuum HOM05D004966 ORTHO05D017532 3.9e-07 59.7 74 43.2
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 3.9e-07 59.7 35 77.1
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 5.0e-07 59.3 35 77.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 5.0e-07 59.3 35 77.1
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 6.6e-07 58.9 35 77.1
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 6.6e-07 58.9 35 74.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 6.6e-07 58.9 35 77.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 6.6e-07 58.9 35 77.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 8.6e-07 58.5 35 74.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 74.3
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 74.3
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-06 58.2 35 77.1
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 1.5e-06 57.8 29 82.8
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.5e-06 57.8 71 45.1
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.5e-06 57.8 35 77.1
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.5e-06 57.8 35 74.3
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.5e-06 57.8 35 74.3
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.9e-06 57.4 35 71.4
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.9e-06 57.4 41 61.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.9e-06 57.4 35 74.3
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 71.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 2.5e-06 57.0 34 73.5
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 77.1
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.5e-06 57.0 35 74.3
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.5e-06 57.0 32 87.5
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.5e-06 57.0 32 75.0
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 3.3e-06 56.6 35 71.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.3e-06 56.6 35 80.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 4.3e-06 56.2 35 71.4
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 4.3e-06 56.2 92 37.0
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 4.3e-06 56.2 35 71.4
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 4.3e-06 56.2 35 71.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 4.3e-06 56.2 35 71.4
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 4.3e-06 56.2 36 72.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 71.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 71.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 71.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 71.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 5.6e-06 55.8 36 66.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 74.3
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 5.6e-06 55.8 35 74.3
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 7.3e-06 55.5 35 68.6
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 7.3e-06 55.5 35 71.4
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 7.3e-06 55.5 35 71.4
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 9.5e-06 55.1 35 71.4
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 9.5e-06 55.1 35 77.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 9.5e-06 55.1 35 68.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 9.5e-06 55.1 35 71.4
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 9.5e-06 55.1 35 68.6


User provided reference genes

Program Settings