Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 3.3e-53 211.5 101 96.0
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 5.6e-53 210.7 101 95.0
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 5.6e-53 210.7 101 95.0
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 7.3e-53 210.3 100 96.0
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 2.1e-52 208.8 101 94.1
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 6.2e-52 207.2 100 93.0
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.4e-51 206.1 101 93.1
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 1.3e-49 199.5 101 88.1
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 1.6e-44 182.6 102 77.5
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 4.6e-39 164.5 89 78.7
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 1.0e-38 163.3 94 73.4
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 1.3e-38 162.9 89 79.8
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 6.6e-38 160.6 89 76.4
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.9e-37 159.1 89 76.4
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.9e-37 159.1 94 71.3
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.5e-37 158.7 92 73.9
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 1.2e-36 156.4 94 71.3
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 1.6e-36 156.0 94 68.1
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.6e-36 156.0 91 72.5
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.6e-36 156.0 91 72.5
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 1.6e-36 156.0 93 69.9
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 1.6e-36 156.0 89 73.0
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 3.6e-36 154.8 93 72.0
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 6.2e-36 154.1 97 66.0
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.2e-36 154.1 89 71.9
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.2e-36 154.1 89 71.9
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 6.2e-36 154.1 93 72.0
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 6.2e-36 154.1 89 74.2
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 6.2e-36 154.1 89 74.2
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 6.2e-36 154.1 89 74.2
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 8.1e-36 153.7 89 74.2
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 8.1e-36 153.7 87 73.6
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 8.1e-36 153.7 92 70.7
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 8.1e-36 153.7 92 70.7
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 1.8e-35 152.5 94 66.0
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 1.8e-35 152.5 94 66.0
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 1.8e-35 152.5 87 73.6
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 1.8e-35 152.5 87 73.6
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 2.4e-35 152.1 91 69.2
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 3.1e-35 151.8 92 68.5
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 3.1e-35 151.8 89 73.0
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.1e-35 151.8 87 72.4
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.1e-35 151.8 87 72.4
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 3.1e-35 151.8 91 69.2
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 4.0e-35 151.4 91 68.1
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 4.0e-35 151.4 89 71.9
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 4.0e-35 151.4 93 68.8
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 4.0e-35 151.4 87 72.4
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 5.2e-35 151.0 89 70.8
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 5.2e-35 151.0 91 68.1
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 5.2e-35 151.0 89 74.2
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 6.9e-35 150.6 91 69.2
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 6.9e-35 150.6 94 69.1
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 9.0e-35 150.2 89 67.4
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 9.0e-35 150.2 88 72.7
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 9.0e-35 150.2 87 71.3
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 9.0e-35 150.2 91 68.1
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 9.0e-35 150.2 92 69.6
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 1.5e-34 149.4 90 67.8
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.5e-34 149.4 89 69.7
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.5e-34 149.4 89 68.5
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 1.5e-34 149.4 93 68.8
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.5e-34 149.4 93 69.9
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.5e-34 149.4 93 68.8
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 1.5e-34 149.4 92 68.5
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 1.5e-34 149.4 89 73.0
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 1.5e-34 149.4 89 73.0
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 2.0e-34 149.1 89 69.7
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 2.0e-34 149.1 89 69.7
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 3.4e-34 148.3 89 68.5
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 3.4e-34 148.3 89 68.5
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 3.4e-34 148.3 89 69.7
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 3.4e-34 148.3 89 70.8
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 5.8e-34 147.5 91 65.9
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 5.8e-34 147.5 89 69.7
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 5.8e-34 147.5 91 68.1
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 7.6e-34 147.1 109 61.5
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 7.6e-34 147.1 89 66.3
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 7.6e-34 147.1 89 66.3
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 9.9e-34 146.7 87 71.3
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 1.3e-33 146.4 89 68.5
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 1.3e-33 146.4 89 69.7
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 1.3e-33 146.4 89 71.9
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 1.7e-33 146.0 89 69.7
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 1.7e-33 146.0 89 69.7
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 1.7e-33 146.0 92 62.0
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 1.7e-33 146.0 94 66.0
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 2.2e-33 145.6 96 59.4
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.9e-33 145.2 91 67.0
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.9e-33 145.2 91 67.0
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 3.8e-33 144.8 89 68.5
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 4.9e-33 144.4 89 64.0
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 6.4e-33 144.1 87 71.3
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 8.4e-33 143.7 91 64.8
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 8.4e-33 143.7 89 64.0
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 8.4e-33 143.7 89 70.8
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 8.4e-33 143.7 89 69.7
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.4e-32 142.9 88 68.2
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.4e-32 142.9 88 68.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 3.2e-32 141.7 99 61.6
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 3.2e-32 141.7 93 67.7
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 3.2e-32 141.7 89 68.5
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 5.4e-32 141.0 89 68.5
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 1.2e-31 139.8 91 65.9
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.2e-31 139.8 84 69.0
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 1.6e-31 139.4 85 68.2
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 1.6e-31 139.4 85 68.2
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 1.3e-30 136.3 86 62.8
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 1.3e-30 136.3 111 56.8
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 2.3e-30 135.6 93 64.5
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.7e-30 133.7 78 71.8
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 3.3e-29 131.7 76 72.4
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 5.6e-29 131.0 89 62.9
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 5.6e-29 131.0 85 63.5
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 7.3e-29 130.6 87 62.1
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 6.2e-28 127.5 85 64.7
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.9e-27 124.0 98 57.1
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 2.0e-26 122.5 67 76.1
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.7e-25 119.4 74 71.6
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.4e-25 117.1 76 67.1
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 7.1e-24 114.0 72 68.1
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.0e-22 110.2 85 55.3
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 3.9e-22 108.2 62 71.0
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 8.7e-22 107.1 69 68.1
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 5.3e-19 97.8 205 30.2
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 3.4e-18 95.1 59 71.2
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.8e-17 91.7 72 58.3
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 4.9e-17 91.3 59 71.2
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.9e-14 81.6 68 51.5
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 1.5e-13 79.7 68 47.1
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 4.0e-11 71.6 59 54.2
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 7.1e-08 60.8 38 57.9
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 4.6e-07 58.2 58 41.4


User provided reference genes

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