Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52216 Brassica carinata HOM05D005623 ORTHO05D039325 3.3e-59 231.5 117 100.0
C01p09800 Brassica napus HOM05D005623 ORTHO05D039325 3.3e-59 231.5 117 100.0
BcaC09g51737 Brassica carinata HOM05D005623 ORTHO05D007130 2.8e-13 79.0 46 82.6
C01p09970 Brassica napus HOM05D005623 ORTHO05D007130 2.8e-13 79.0 46 82.6
BolC1t00959H Brassica oleracea HOM05D005623 ORTHO05D007130 2.8e-13 79.0 46 82.6
A01p08540 Brassica napus HOM05D005623 ORTHO05D007130 1.8e-12 76.3 45 82.2
BraA01t00803Z Brassica rapa HOM05D005623 ORTHO05D007130 1.8e-12 76.3 45 82.2
AT4G29490 Arabidopsis thaliana HOM05D005623 ORTHO05D007130 6.8e-12 74.3 46 78.3
CARHR237320 Cardamine hirsuta HOM05D005623 ORTHO05D007130 6.8e-12 74.3 46 78.3
Thhalv10025013m.g Eutrema salsugineum HOM05D005623 ORTHO05D007130 6.8e-12 74.3 46 78.3
Sp7g27360 Schrenkiella parvula HOM05D005623 ORTHO05D007130 1.2e-11 73.6 46 78.3
AL7G22900 Arabidopsis lyrata HOM05D005623 ORTHO05D007130 9.9e-11 70.5 84 52.4
Carub.0007s1105 Capsella rubella HOM05D005623 ORTHO05D007130 1.3e-10 70.1 84 52.4
THA.LOC104814603 Tarenaya hassleriana HOM05D005623 ORTHO05D007130 5.4e-09 64.7 46 69.6
Gohir.A06G071000 Gossypium hirsutum HOM05D005623 ORTHO05D007130 1.2e-08 63.5 46 63.0
Gohir.D06G069700 Gossypium hirsutum HOM05D005623 ORTHO05D007130 1.2e-08 63.5 46 63.0
Gorai.010G081300 Gossypium raimondii HOM05D005623 ORTHO05D007130 1.2e-08 63.5 46 63.0
Aa31LG2G20980 Aethionema arabicum HOM05D005623 ORTHO05D007130 1.6e-08 63.2 66 56.1
COL.COLO4_18232 Corchorus olitorius HOM05D005623 ORTHO05D007130 1.6e-08 63.2 46 65.2
Thecc.09G093300 Theobroma cacao HOM05D005623 ORTHO05D007130 2.7e-08 62.4 46 63.0
Sc14g0000790 Simmondsia chinensis HOM05D005623 ORTHO05D007130 4.6e-08 61.6 45 64.4
Cpa.g.sc78.66 Carica papaya HOM05D005623 ORTHO05D007130 7.8e-08 60.8 76 47.4
Eucgr.C03666 Eucalyptus grandis HOM05D005623 ORTHO05D007130 1.3e-07 60.1 46 58.7
Lj4A313G21 Lonicera japonica HOM05D005623 ORTHO05D007130 1.3e-07 60.1 45 60.0
Os02g0224400 Oryza sativa ssp. japonica HOM05D005623 ORTHO05D007130 1.3e-07 60.1 45 62.2
Zm00001eb239790 Zea mays HOM05D005623 ORTHO05D007130 1.3e-07 60.1 48 58.3
TWI34G0204 Tripterygium wilfordii HOM05D005623 ORTHO05D007130 2.3e-07 59.3 45 60.0
Duzib187G0326 Durio zibethinus HOM05D005623 ORTHO05D007130 3.0e-07 58.9 45 62.2
QL02p063259 Quercus lobata HOM05D005623 ORTHO05D007130 3.0e-07 58.9 46 60.9
CANSAT56G1243 Cannabis sativa HOM05D005623 ORTHO05D007130 3.9e-07 58.5 45 57.8
Dinv42293 Davidia involucrata HOM05D005623 ORTHO05D007130 3.9e-07 58.5 46 58.7
Atru.chr7.1542 Acer truncatum HOM05D005623 ORTHO05D007130 6.6e-07 57.8 83 44.6
CSS0001651 Camellia sinensis var. sinensis HOM05D005623 ORTHO05D007130 8.6e-07 57.4 46 58.7
HanXRQChr10g0319101 Helianthus annuus HOM05D005623 ORTHO05D007130 8.6e-07 57.4 46 58.7
MBI04_g11706_MAGBIO Magnolia biondii HOM05D005623 ORTHO05D007130 8.6e-07 57.4 42 61.9
Migut.J00444 Erythranthe guttata HOM05D005623 ORTHO05D007130 1.5e-06 56.6 46 58.7
Lsat_1_v5_gn_5_145881 Lactuca sativa HOM05D005623 ORTHO05D007130 1.5e-06 56.6 45 60.0
unitig_26.g9166 Utricularia gibba HOM05D005623 ORTHO05D007130 1.9e-06 56.2 84 46.4
MSTRG.6040 Avicennia marina HOM05D005623 ORTHO05D007130 2.5e-06 55.8 46 56.5
Actinidia25269 Actinidia chinensis HOM05D005623 ORTHO05D007130 3.3e-06 55.5 46 58.7
SGA_v2.0_scaffold10G05202 Striga asiatica HOM05D005623 ORTHO05D007130 3.3e-06 55.5 46 56.5
vmacro10811 Vaccinium macrocarpon HOM05D005623 ORTHO05D007130 3.3e-06 55.5 46 56.5
Ciclev10007793m.g Citrus clementina HOM05D005623 ORTHO05D007130 5.6e-06 54.7 46 56.5
Cc06_g11060 Coffea canephora HOM05D005623 ORTHO05D007130 7.3e-06 54.3 47 59.6
Rhsim05G0035400 Rhododendron simsii HOM05D005623 ORTHO05D007130 7.3e-06 54.3 46 56.5
SalBow6G5356 Salvia bowleyana HOM05D005623 ORTHO05D007130 7.3e-06 54.3 46 54.3


User provided reference genes

Program Settings