Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.2e-161 573.2 301 100.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.8e-78 295.4 162 90.7
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.3e-72 276.6 158 86.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 6.1e-65 251.9 230 58.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.6e-63 246.5 226 57.5
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 2.9e-62 243.0 231 53.7
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 6.4e-62 241.9 230 55.2
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.1e-61 241.1 230 60.0
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 5.4e-61 238.8 230 55.7
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 2.0e-60 236.9 224 56.7
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.0e-60 236.9 224 56.7
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 4.6e-60 235.7 271 49.4
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.0e-59 234.6 230 54.3
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 3.0e-59 233.0 253 52.2
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.5e-58 230.7 255 51.0
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 4.3e-58 229.2 255 50.6
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.2e-57 227.6 214 56.1
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 6.2e-57 225.3 230 58.3
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.3e-56 223.4 231 54.1
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 3.1e-56 223.0 214 57.0
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 6.8e-56 221.9 209 57.4
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 8.9e-56 221.5 212 54.2
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 2.6e-55 219.9 220 53.6
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 3.4e-55 219.5 214 53.7
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 3.4e-55 219.5 209 56.5
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 5.8e-55 218.8 214 53.3
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 9.8e-55 218.0 230 55.2
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.7e-54 217.2 228 51.3
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 6.4e-54 215.3 211 57.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.1e-53 214.5 214 53.3
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.1e-53 214.5 220 57.3
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.4e-53 214.2 212 53.8
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 1.4e-53 214.2 212 53.8
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.9e-53 213.8 209 56.9
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.2e-53 213.0 227 47.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 4.1e-53 212.6 257 52.5
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 5.4e-53 212.2 212 54.2
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 9.2e-53 211.5 209 56.0
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.2e-52 211.1 277 50.2
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 2.1e-52 210.3 212 54.2
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 4.6e-52 209.1 255 52.2
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 6.0e-52 208.8 214 52.3
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.0e-51 208.0 227 52.0
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 1.0e-51 208.0 257 52.1
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.3e-51 207.6 206 56.3
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 3.0e-51 206.5 257 51.4
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 3.0e-51 206.5 249 53.0
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 3.9e-51 206.1 212 54.7
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.5e-50 204.1 212 50.5
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 1.9e-50 203.8 215 50.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 1.9e-50 203.8 212 52.4
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 5.6e-50 202.2 254 51.6
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 9.5e-50 201.4 254 51.6
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 9.5e-50 201.4 223 52.0
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.2e-49 201.1 254 51.2
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 3.6e-49 199.5 210 54.3
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.1e-48 198.0 254 45.3
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.8e-48 197.2 206 57.3
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.3e-48 196.8 230 50.4
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 4.0e-48 196.1 196 53.6
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 4.0e-48 196.1 214 51.4
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 6.8e-48 195.3 211 55.5
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.7e-46 190.7 204 54.9
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 2.4e-45 186.8 228 46.5
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 9.2e-45 184.9 194 49.0
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 1.2e-44 184.5 231 45.5
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.7e-44 183.3 209 51.7
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.8e-44 181.8 209 52.6
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 1.7e-43 180.6 230 45.2
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.7e-43 180.6 240 45.4
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 6.6e-43 178.7 228 45.2
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 1.5e-42 177.6 172 54.7
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.3e-42 176.0 174 52.3
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 2.8e-41 173.3 212 44.3
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 6.2e-41 172.2 234 47.4
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 6.2e-41 172.2 174 52.3
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.8e-40 170.6 245 43.3
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 3.1e-40 169.9 204 45.6
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 2.6e-39 166.8 174 51.1
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 3.4e-39 166.4 228 44.7
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 5.8e-39 165.6 228 43.9
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 5.8e-39 165.6 209 48.8
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 1.1e-37 161.4 251 44.2
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 7.1e-37 158.7 189 52.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 9.2e-37 158.3 214 45.8
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 2.1e-36 157.1 220 51.8
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 3.5e-36 156.4 204 45.1
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 7.8e-36 155.2 206 48.5
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.0e-35 154.8 168 52.4
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 2.3e-35 153.7 176 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 3.0e-35 153.3 236 46.2
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 3.0e-35 153.3 149 55.7
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.0e-35 153.3 151 58.9
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 5.1e-35 152.5 194 44.3
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.6e-35 152.1 174 51.1
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 2.5e-34 150.2 151 54.3
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 5.3e-32 142.5 222 45.9
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 2.0e-31 140.6 204 40.2
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.6e-31 140.2 157 53.5
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 3.8e-30 136.3 144 51.4
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 1.1e-29 134.8 277 35.4
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 3.2e-29 133.3 144 56.2
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.2e-29 132.9 149 45.0
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 3.3e-26 123.2 144 49.3
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 9.6e-26 121.7 101 64.4
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 1.6e-25 120.9 146 54.1
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.8e-25 120.2 218 35.8
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 2.4e-24 117.1 128 50.8
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.1e-24 116.7 137 54.0
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 4.0e-24 116.3 124 57.3
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 2.0e-23 114.0 138 48.6
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 5.8e-23 112.5 94 59.6
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 1.9e-21 107.5 131 45.0
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 2.4e-21 107.1 204 34.8
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 4.6e-20 102.8 107 54.2
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 1.1e-18 98.2 257 33.1
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 1.6e-17 94.4 75 69.3
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.1e-13 81.6 86 45.3
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.3e-11 74.7 176 35.2
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 1.8e-11 74.3 52 61.5
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.0e-11 73.6 52 63.5
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.9e-11 73.2 69 52.2
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 1.5e-10 71.2 60 56.7
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 3.3e-10 70.1 52 59.6
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 7.4e-10 68.9 52 59.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.6e-09 67.8 41 78.0
BolC1t00952H Brassica oleracea HOM05D006034 ORTHO05D041974 4.8e-09 66.2 90 47.8
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 3.1e-08 63.5 74 44.6
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 6.9e-08 62.4 48 58.3
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.2e-06 57.4 36 72.2


User provided reference genes

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