Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p09700 Brassica napus HOM05D000371 ORTHO05D040217 4.5e-77 291.2 147 100.0
BolC9t59919H Brassica oleracea HOM05D000040 ORTHO05D040217 1.9e-64 249.2 167 80.2
C08p37590 Brassica napus HOM05D001550 ORTHO05D001611 8.0e-18 94.4 74 68.9
BcaC04g19282 Brassica carinata HOM05D000040 ORTHO05D001305 3.3e-11 72.4 42 81.0
BolC9t59421H Brassica oleracea HOM05D000040 ORTHO05D001305 3.3e-11 72.4 42 81.0
BcaB08g37303 Brassica carinata HOM05D000040 ORTHO05D001305 5.6e-11 71.6 42 81.0
C09p65980 Brassica napus HOM05D000040 ORTHO05D001305 3.6e-10 68.9 42 76.2
BraA10t44735Z Brassica rapa HOM05D000040 ORTHO05D001305 8.0e-10 67.8 42 73.8
A10p26810 Brassica napus HOM05D000040 ORTHO05D001305 1.0e-09 67.4 42 73.8
Sp3g22840 Schrenkiella parvula HOM05D000371 ORTHO05D004413 1.0e-09 67.4 63 57.1
Carub.0003s2559 Capsella rubella HOM05D000371 ORTHO05D004413 1.4e-09 67.0 64 56.2
AL3G41120 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 1.8e-09 66.6 63 57.1
AT3G25220 Arabidopsis thaliana HOM05D000371 ORTHO05D004413 1.8e-09 66.6 64 56.2
BolC5t33058H Brassica oleracea HOM05D000040 ORTHO05D001305 3.1e-09 65.9 32 100.0
BraA02t06941Z Brassica rapa HOM05D000147 ORTHO05D011672 3.1e-09 65.9 34 94.1
CARHR101570 Cardamine hirsuta HOM05D000371 ORTHO05D004413 3.1e-09 65.9 63 55.6
A10p15730 Brassica napus HOM05D000761 ORTHO05D001062 4.0e-09 65.5 36 88.9
Sp6g32690 Schrenkiella parvula HOM05D000040 ORTHO05D001305 5.2e-09 65.1 67 52.2
BcaB08g34445 Brassica carinata HOM05D000371 ORTHO05D004413 6.8e-09 64.7 64 56.2
Thhalv10013429m.g Eutrema salsugineum HOM05D000040 ORTHO05D001305 1.2e-08 63.9 42 73.8
C05p26880 Brassica napus HOM05D000040 ORTHO05D001305 1.5e-08 63.5 68 50.0
Thhalv10002679m.g Eutrema salsugineum HOM05D000371 ORTHO05D004413 1.5e-08 63.5 63 55.6
C06p31640 Brassica napus HOM05D000147 ORTHO05D011672 2.0e-08 63.2 34 91.2
A03p44130 Brassica napus HOM05D000371 ORTHO05D004413 3.4e-08 62.4 45 66.7
BraA03t13542Z Brassica rapa HOM05D000371 ORTHO05D004413 3.4e-08 62.4 45 66.7
BcaC01g03235 Brassica carinata HOM05D000371 ORTHO05D004413 4.4e-08 62.0 45 66.7
C03p54500 Brassica napus HOM05D000371 ORTHO05D004413 4.4e-08 62.0 45 66.7
BolC3t17737H Brassica oleracea HOM05D000371 ORTHO05D004413 4.4e-08 62.0 45 66.7
Nn1g08129 Nelumbo nucifera HOM05D000371 ORTHO05D004413 5.8e-08 61.6 62 51.6
Thecc.01G215300 Theobroma cacao HOM05D000371 ORTHO05D004413 7.5e-08 61.2 38 73.7
Gohir.A11G140600 Gossypium hirsutum HOM05D000371 ORTHO05D004413 9.8e-08 60.8 38 68.4
Gohir.D11G147100 Gossypium hirsutum HOM05D000371 ORTHO05D004413 9.8e-08 60.8 38 68.4
Gorai.007G157500 Gossypium raimondii HOM05D000371 ORTHO05D004413 9.8e-08 60.8 38 68.4
GSVIVG01005148001 Vitis vinifera HOM05D000371 ORTHO05D004413 9.8e-08 60.8 58 55.2
AL6G21350 Arabidopsis lyrata HOM05D000040 ORTHO05D001305 1.3e-07 60.5 42 69.0
AT5G10770 Arabidopsis thaliana HOM05D000040 ORTHO05D001305 1.3e-07 60.5 42 69.0
CARHR202530 Cardamine hirsuta HOM05D000040 ORTHO05D001305 1.3e-07 60.5 42 71.4
Ciclev10032978m.g Citrus clementina HOM05D000371 ORTHO05D004413 1.3e-07 60.5 42 66.7
Lalb_Chr07g0194391 Lupinus albus HOM05D000371 ORTHO05D004413 1.3e-07 60.5 42 64.3
Actinidia09455 Actinidia chinensis HOM05D000371 ORTHO05D004413 1.7e-07 60.1 42 64.3
Actinidia23775 Actinidia chinensis HOM05D000371 ORTHO05D004413 1.7e-07 60.1 42 64.3
COL.COLO4_16001 Corchorus olitorius HOM05D000371 ORTHO05D004413 1.7e-07 60.1 38 68.4
Gohir.A07G197900 Gossypium hirsutum HOM05D000371 ORTHO05D004413 1.7e-07 60.1 38 71.1
Gohir.D07G204300 Gossypium hirsutum HOM05D000371 ORTHO05D004413 1.7e-07 60.1 38 71.1
Gorai.001G230100 Gossypium raimondii HOM05D000371 ORTHO05D004413 1.7e-07 60.1 38 71.1
SEGI_02686 Sequoiadendron giganteum HOM05D000371 ORTHO05D004413 1.7e-07 60.1 44 63.6
Dinv30669 Davidia involucrata HOM05D000371 ORTHO05D004413 2.2e-07 59.7 42 64.3
Dinv34329 Davidia involucrata HOM05D000371 ORTHO05D004413 2.2e-07 59.7 42 64.3
Lsat_1_v5_gn_9_17380 Lactuca sativa HOM05D000371 ORTHO05D004413 2.2e-07 59.7 42 61.9
Lj3g0015986 Lotus japonicus HOM05D000371 ORTHO05D004413 2.2e-07 59.7 42 61.9
CSS0014653 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 2.9e-07 59.3 42 61.9
DCAR_012683 Daucus carota HOM05D000371 ORTHO05D004413 2.9e-07 59.3 46 63.0
Duzib211G0112 Durio zibethinus HOM05D000371 ORTHO05D004413 2.9e-07 59.3 38 71.1
Eucgr.H00751 Eucalyptus grandis HOM05D000371 ORTHO05D004413 2.9e-07 59.3 38 68.4
THA.LOC104804637 Tarenaya hassleriana HOM05D000371 ORTHO05D004413 2.9e-07 59.3 38 65.8
ATR1147G058 Amborella trichopoda HOM05D000371 ORTHO05D004413 3.7e-07 58.9 46 56.5
Aqoxy2G03942 Aquilegia oxysepala HOM05D000371 ORTHO05D004413 3.7e-07 58.9 43 62.8
CDE07G1844 Ceratophyllum demersum HOM05D000371 ORTHO05D004413 3.7e-07 58.9 42 61.9
Medtr8g012380 Medicago truncatula HOM05D000371 ORTHO05D004413 3.7e-07 58.9 42 61.9
TPR.G16436 Trifolium pratense HOM05D000371 ORTHO05D004413 3.7e-07 58.9 42 61.9
TAR636G0461 Trochodendron aralioides HOM05D000371 ORTHO05D004413 3.7e-07 58.9 42 64.3
TAR636G1333 Trochodendron aralioides HOM05D000371 ORTHO05D004413 3.7e-07 58.9 42 64.3
CSS0011995 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 4.9e-07 58.5 38 65.8
Carub.0006s0927 Capsella rubella HOM05D000040 ORTHO05D001305 4.9e-07 58.5 42 66.7
PSO017G5395 Papaver somniferum HOM05D000371 ORTHO05D004413 4.9e-07 58.5 45 60.0
Phvul.010G024400 Phaseolus vulgaris HOM05D000371 ORTHO05D004413 4.9e-07 58.5 47 55.3
Rhsim01G0250200 Rhododendron simsii HOM05D000371 ORTHO05D004413 4.9e-07 58.5 38 68.4
Zm00001eb364840 Zea mays HOM05D000371 ORTHO05D004413 4.9e-07 58.5 38 68.4
Atru.chr6.1454 Acer truncatum HOM05D000371 ORTHO05D004413 6.4e-07 58.2 34 73.5
Hma1.2p1_1234F.1_g269040 Hydrangea macrophylla HOM05D000371 ORTHO05D004413 6.4e-07 58.2 42 64.3
Os01g0915800 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D004413 6.4e-07 58.2 38 68.4
PSO675G2000 Papaver somniferum HOM05D000371 ORTHO05D004413 6.4e-07 58.2 45 60.0
TWI36G1727 Tripterygium wilfordii HOM05D000371 ORTHO05D004413 6.4e-07 58.2 45 62.2
VMungo0331G2032 Vigna mungo HOM05D000371 ORTHO05D004413 6.4e-07 58.2 47 57.4
BcaB05g21505 Brassica carinata HOM05D000040 ORTHO05D001305 8.3e-07 57.8 42 64.3
Cc01_g16420 Coffea canephora HOM05D000371 ORTHO05D004413 8.3e-07 57.8 43 58.1
ECA248G1163 Erigeron canadensis HOM05D000371 ORTHO05D004413 8.3e-07 57.8 38 68.4
MSTRG.18825 Avicennia marina HOM05D000371 ORTHO05D004413 1.1e-06 57.4 51 54.9
HanXRQChr08g0232321 Helianthus annuus HOM05D000371 ORTHO05D004413 1.1e-06 57.4 42 61.9
MBI07_g06199_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D004413 1.1e-06 57.4 38 65.8
TWI75G1821 Tripterygium wilfordii HOM05D000371 ORTHO05D004413 1.1e-06 57.4 45 60.0
Zm00001eb143510 Zea mays HOM05D000371 ORTHO05D004413 1.1e-06 57.4 38 68.4
Glyma.16G088200 Glycine max HOM05D000371 ORTHO05D004413 1.4e-06 57.0 47 53.2
HanXRQChr01g0017181 Helianthus annuus HOM05D000371 ORTHO05D004413 1.4e-06 57.0 38 68.4
Nn3g20117 Nelumbo nucifera HOM05D000371 ORTHO05D004413 1.4e-06 57.0 42 64.3
PGR083G1508 Punica granatum HOM05D000371 ORTHO05D004413 1.4e-06 57.0 37 67.6
THA.LOC104822480 Tarenaya hassleriana HOM05D000371 ORTHO05D004413 1.4e-06 57.0 38 65.8
arahy.Tifrunner.gnm1.ann1.0JX5VM Arachis hypogaea HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 65.8
arahy.Tifrunner.gnm1.ann1.4803WV Arachis hypogaea HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 65.8
BcaB07g30033 Brassica carinata HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 63.2
BcaC03g13331 Brassica carinata HOM05D000040 ORTHO05D001305 1.9e-06 56.6 42 64.3
BcaC03g17661 Brassica carinata HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 63.2
A02p00650 Brassica napus HOM05D000040 ORTHO05D001305 1.9e-06 56.6 42 64.3
C02p04650 Brassica napus HOM05D000040 ORTHO05D001305 1.9e-06 56.6 42 64.3
C02p56670 Brassica napus HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 63.2
BolC2t06424H Brassica oleracea HOM05D000040 ORTHO05D001305 1.9e-06 56.6 42 64.3
BolC2t11728H Brassica oleracea HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 63.2
BraA02t05049Z Brassica rapa HOM05D000040 ORTHO05D001305 1.9e-06 56.6 42 64.3
CDE04G0845 Ceratophyllum demersum HOM05D000371 ORTHO05D004413 1.9e-06 56.6 42 59.5
Hma1.2p1_0226F.1_g095170 Hydrangea macrophylla HOM05D000371 ORTHO05D004413 1.9e-06 56.6 40 60.0
Lsat_1_v5_gn_5_178981 Lactuca sativa HOM05D000371 ORTHO05D004413 1.9e-06 56.6 38 65.8
Psat4g204760 Pisum sativum HOM05D000371 ORTHO05D004413 1.9e-06 56.6 36 66.7
QL09p049282 Quercus lobata HOM05D000371 ORTHO05D004413 1.9e-06 56.6 52 53.8
Aa31LG3G16330 Aethionema arabicum HOM05D000040 ORTHO05D001305 2.4e-06 56.2 42 61.9
Ca_23207_v3 Cicer arietinum L. HOM05D000371 ORTHO05D004413 2.4e-06 56.2 42 57.1
MSTRG.20983 Avicennia marina HOM05D000371 ORTHO05D004413 3.2e-06 55.8 38 63.2
SalBow6G7064 Salvia bowleyana HOM05D000371 ORTHO05D004413 3.2e-06 55.8 38 63.2
SGA_v2.0_scaffold18G08341 Striga asiatica HOM05D000371 ORTHO05D004413 3.2e-06 55.8 38 65.8
Aa31sc18G130 Aethionema arabicum HOM05D000371 ORTHO05D004413 4.1e-06 55.5 38 65.8
CSS0014759 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 4.1e-06 55.5 38 60.5
CSS0028690 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 4.1e-06 55.5 38 60.5
Carub.0008s0821 Capsella rubella HOM05D000371 ORTHO05D004413 4.1e-06 55.5 38 63.2
Manes.12G050600 Manihot esculenta HOM05D000371 ORTHO05D004413 4.1e-06 55.5 38 60.5
CSS0040889 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 5.4e-06 55.1 35 65.7
EL10Ac7g17955 Beta vulgaris HOM05D000371 ORTHO05D004413 7.0e-06 54.7 38 63.2
CARHR183430 Cardamine hirsuta HOM05D000371 ORTHO05D004413 7.0e-06 54.7 38 60.5
Os09g0501850 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D004413 7.0e-06 54.7 38 63.2
Rhsim13G0050600 Rhododendron simsii HOM05D000371 ORTHO05D004413 7.0e-06 54.7 38 63.2
Sc24g0003430 Simmondsia chinensis HOM05D000599 ORTHO05D004413 7.0e-06 54.7 38 63.2
HPP92_025245 Vanilla planifolia HOM05D000371 ORTHO05D004413 7.0e-06 54.7 38 63.2
AL43U10060 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 63.2
AL8G21570 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 63.2
AT5G48580 Arabidopsis thaliana HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 63.2
A02p37570 Brassica napus HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 60.5
BraA02t08742Z Brassica rapa HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 60.5
ECA247G0312 Erigeron canadensis HOM05D000371 ORTHO05D004413 9.2e-06 54.3 46 54.3
MBI03_g13451_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D000759 9.2e-06 54.3 45 57.8
Manes.13G052000 Manihot esculenta HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 63.2
Potri.002G248200 Populus trichocarpa HOM05D000371 ORTHO05D004413 9.2e-06 54.3 42 59.5
Hund05591 Selenicereus undatus HOM05D000371 ORTHO05D004413 9.2e-06 54.3 38 60.5


User provided reference genes

Program Settings