Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 9.8e-41 169.9 96 100.0
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 8.3e-16 87.0 104 61.5
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 7.1e-15 84.0 96 64.6
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.6e-14 82.8 96 63.5
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.6e-14 82.8 96 63.5
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.5e-14 81.6 96 62.5
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.5e-14 81.6 96 62.5
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 4.6e-14 81.3 96 62.5
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 4.6e-14 81.3 96 62.5
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 4.6e-14 81.3 96 63.5
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 7.8e-14 80.5 96 61.5
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 7.8e-14 80.5 96 62.5
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 7.8e-14 80.5 96 62.5
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 1.0e-13 80.1 96 62.5
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 1.0e-13 80.1 104 57.7
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 3.9e-13 78.2 108 57.4
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.5e-12 76.3 95 60.0
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 3.3e-12 75.1 95 58.9
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 4.3e-12 74.7 95 58.9
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 7.3e-12 73.9 96 57.3
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 2.1e-11 72.4 82 64.6
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 1.4e-10 69.7 96 56.2
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 4.0e-10 68.2 96 54.2
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 4.0e-10 68.2 96 54.2
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 4.0e-10 68.2 96 54.2
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 6.8e-10 67.4 96 55.2
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 6.8e-10 67.4 96 52.1
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 6.8e-10 67.4 96 54.2
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 6.8e-10 67.4 96 54.2
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 8.9e-10 67.0 96 52.1
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 8.9e-10 67.0 96 53.1
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 8.9e-10 67.0 96 53.1
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.2e-09 66.6 94 52.1
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.2e-09 66.6 94 52.1
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.2e-09 66.6 96 51.0
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.5e-09 66.2 96 53.1
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 1.5e-09 66.2 96 52.1
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 1.5e-09 66.2 96 51.0
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 2.0e-09 65.9 96 53.1
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 2.0e-09 65.9 96 53.1
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 2.6e-09 65.5 94 52.1
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 2.6e-09 65.5 96 51.0
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 2.6e-09 65.5 96 51.0
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 2.6e-09 65.5 96 52.1
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.6e-09 65.5 96 51.0
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 2.6e-09 65.5 96 52.1
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 2.6e-09 65.5 95 54.7
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 3.4e-09 65.1 84 58.3
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 3.4e-09 65.1 96 51.0
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 3.4e-09 65.1 96 50.0
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 3.4e-09 65.1 96 52.1
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 4.4e-09 64.7 96 52.1
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 4.4e-09 64.7 96 53.1
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 5.8e-09 64.3 84 59.5
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 5.8e-09 64.3 96 54.2
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 5.8e-09 64.3 96 51.0
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 5.8e-09 64.3 96 52.1
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 7.6e-09 63.9 96 49.0
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 9.9e-09 63.5 96 51.0
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 1.3e-08 63.2 96 51.0
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 1.3e-08 63.2 96 51.0
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 1.3e-08 63.2 96 50.0
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.7e-08 62.8 96 47.9
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 1.7e-08 62.8 95 49.5
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 2.2e-08 62.4 96 49.0
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 2.2e-08 62.4 96 49.0
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 2.2e-08 62.4 96 49.0
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.9e-08 62.0 95 48.4
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 2.9e-08 62.0 96 51.0
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 2.9e-08 62.0 93 52.7
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 3.8e-08 61.6 96 49.0
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 6.4e-08 60.8 96 46.9
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 6.4e-08 60.8 95 48.4
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 6.4e-08 60.8 95 48.4
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 8.4e-08 60.5 95 48.4
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 47.9
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 47.9
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 49.0
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 1.1e-07 60.1 96 47.9
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 1.4e-07 59.7 96 49.0
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.4e-07 59.7 95 49.5
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.4e-07 59.7 95 49.5
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.4e-07 59.7 95 48.4
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.4e-07 59.7 95 49.5
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 1.4e-07 59.7 95 49.5
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 1.4e-07 59.7 96 50.0
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.9e-07 59.3 96 47.9
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 1.9e-07 59.3 96 47.9
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 1.9e-07 59.3 96 44.8
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 1.9e-07 59.3 96 44.8
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 1.9e-07 59.3 96 46.9
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 2.4e-07 58.9 96 44.8
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 2.4e-07 58.9 94 50.0
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 2.4e-07 58.9 96 46.9
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 3.2e-07 58.5 96 46.9
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 3.2e-07 58.5 96 46.9
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 4.2e-07 58.2 96 45.8
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 5.4e-07 57.8 96 49.0
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 7.1e-07 57.4 94 47.9
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 7.1e-07 57.4 95 46.3
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 9.3e-07 57.0 95 48.4
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 9.3e-07 57.0 95 48.4
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 2.1e-06 55.8 96 46.9
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 2.1e-06 55.8 95 45.3
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 2.7e-06 55.5 96 44.8
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 2.7e-06 55.5 96 45.8
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 3.5e-06 55.1 94 45.7
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 3.5e-06 55.1 94 45.7
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.5e-06 55.1 84 52.4
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 4.6e-06 54.7 96 44.8
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 6.0e-06 54.3 96 45.8


User provided reference genes

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