Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 2.1e-89 332.4 174 100.0
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 2.1e-89 332.4 174 100.0
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 6.2e-86 320.9 174 96.6
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 6.2e-86 320.9 174 96.6
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.9e-82 309.3 177 91.5
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 1.9e-82 309.3 177 92.1
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 3.2e-82 308.5 174 91.4
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 3.2e-82 308.5 177 92.1
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 4.6e-81 304.7 174 92.0
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 2.3e-80 302.4 175 90.9
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 3.0e-80 302.0 175 90.9
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 1.9e-79 299.3 177 88.1
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 1.9e-79 299.3 175 89.7
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 1.9e-79 299.3 178 88.2
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 4.3e-79 298.1 175 89.7
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 5.6e-79 297.7 177 85.9
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 6.9e-77 290.8 177 83.1
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 1.0e-72 276.9 176 79.5
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 1.3e-72 276.6 175 79.4
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 6.7e-72 274.2 160 85.6
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 1.1e-71 273.5 177 76.8
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 2.5e-71 272.3 175 78.3
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 2.5e-71 272.3 176 78.4
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 3.3e-71 271.9 176 77.3
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 4.3e-71 271.6 174 77.6
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.6e-70 269.6 177 76.3
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 2.2e-70 269.2 164 82.9
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.8e-70 268.9 176 75.6
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 3.7e-70 268.5 161 83.2
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 4.8e-70 268.1 177 75.7
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 4.8e-70 268.1 177 76.3
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 6.3e-70 267.7 174 75.9
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 1.1e-69 266.9 178 74.2
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.8e-69 266.2 176 73.9
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.8e-69 266.2 176 73.9
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 1.8e-69 266.2 177 74.6
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 4.1e-69 265.0 172 74.4
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 4.1e-69 265.0 174 75.3
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 4.1e-69 265.0 165 79.4
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 5.3e-69 264.6 178 72.5
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 9.0e-69 263.8 176 73.3
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 9.0e-69 263.8 176 73.3
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 1.2e-68 263.5 160 81.2
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.5e-68 263.1 176 73.9
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 2.6e-68 262.3 176 73.9
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 1.0e-67 260.4 175 73.7
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 1.3e-67 260.0 176 74.4
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 1.7e-67 259.6 173 74.0
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 1.7e-67 259.6 174 71.3
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 1.7e-67 259.6 159 80.5
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 2.2e-67 259.2 174 73.6
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 3.8e-67 258.5 179 72.6
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 3.8e-67 258.5 163 77.9
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 5.0e-67 258.1 174 73.6
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 6.5e-67 257.7 168 78.6
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 6.5e-67 257.7 164 78.0
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 6.5e-67 257.7 174 75.9
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 8.5e-67 257.3 173 73.4
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 8.5e-67 257.3 173 73.4
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 8.5e-67 257.3 178 73.6
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 8.5e-67 257.3 168 76.8
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 1.1e-66 256.9 179 73.7
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 1.1e-66 256.9 161 78.9
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.4e-66 256.5 173 73.4
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.9e-66 256.1 174 69.5
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 1.9e-66 256.1 178 70.8
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 2.5e-66 255.8 174 73.0
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 3.2e-66 255.4 161 77.6
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 4.2e-66 255.0 175 74.3
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 7.2e-66 254.2 179 72.1
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 1.2e-65 253.4 182 72.0
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 1.2e-65 253.4 182 72.0
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 1.2e-65 253.4 182 72.0
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 1.2e-65 253.4 179 72.1
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 1.2e-65 253.4 179 72.1
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 1.6e-65 253.1 166 78.9
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.1e-65 252.7 179 71.5
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 2.1e-65 252.7 179 70.9
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 3.6e-65 251.9 170 76.5
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 7.9e-65 250.8 172 75.6
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 7.9e-65 250.8 170 74.7
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 7.9e-65 250.8 174 73.0
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 7.9e-65 250.8 151 82.1
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.3e-64 250.0 174 73.0
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 1.8e-64 249.6 174 72.4
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 1.8e-64 249.6 179 70.4
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 3.9e-64 248.4 174 71.3
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 8.7e-64 247.3 153 77.8
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 1.5e-63 246.5 178 68.5
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.5e-63 246.5 151 80.1
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 2.5e-63 245.7 152 77.0
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 4.3e-63 245.0 153 79.1
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 1.3e-62 243.4 153 78.4
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 2.8e-62 242.3 163 74.8
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 6.3e-62 241.1 173 70.5
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 8.2e-62 240.7 161 73.3
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 5.3e-61 238.0 146 80.8
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 5.3e-61 238.0 176 67.0
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 9.1e-61 237.3 167 69.5
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 2.0e-60 236.1 142 80.3
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 3.4e-60 235.3 171 68.4
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 2.2e-59 232.6 176 66.5
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 9.4e-58 227.3 153 69.9
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 1.2e-57 226.9 158 69.0
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.0e-56 223.8 155 71.0
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 5.1e-56 221.5 167 66.5
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 9.7e-55 217.2 145 75.2
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 2.8e-54 215.7 137 73.0
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 1.8e-53 213.0 152 72.4
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 1.4e-50 203.4 129 76.7
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 1.6e-49 199.9 155 65.8
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 4.7e-49 198.4 129 84.5
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 6.1e-49 198.0 154 65.6
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 8.0e-49 197.6 120 80.0
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 3.0e-48 195.7 118 82.2
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 6.7e-48 194.5 153 60.1
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 6.7e-48 194.5 121 82.6
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 4.4e-47 191.8 129 73.6
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 4.8e-46 188.3 152 62.5
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 1.3e-43 180.3 108 81.5
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 3.8e-43 178.7 131 66.4
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.5e-42 176.0 106 79.2
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 5.5e-42 174.9 106 79.2
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 4.4e-31 138.7 91 73.6
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 4.5e-28 128.6 123 48.0
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.0e-16 90.9 106 52.8
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 5.6e-10 68.6 120 40.8


User provided reference genes

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