Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 1.4e-78 296.2 145 100.0
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 2.7e-66 255.4 145 89.7
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 7.9e-26 120.9 136 52.9
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 7.9e-26 120.9 136 53.7
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 1.8e-25 119.8 136 52.9
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 2.3e-25 119.4 136 52.9
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 2.3e-25 119.4 136 52.9
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 2.3e-25 119.4 136 52.9
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 4.3e-24 115.2 136 51.5
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 4.3e-24 115.2 136 52.9
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 4.3e-24 115.2 136 52.9
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 7.4e-24 114.4 136 51.5
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 7.4e-24 114.4 136 52.2
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 2.8e-23 112.5 136 50.7
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 3.7e-23 112.1 136 48.5
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 4.8e-23 111.7 136 51.5
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 4.0e-22 108.6 136 49.3
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 5.3e-22 108.2 136 47.1
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 5.3e-22 108.2 136 47.1
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 5.3e-22 108.2 136 47.1
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 6.9e-22 107.8 136 47.1
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 1.2e-21 107.1 138 46.4
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 2.6e-21 105.9 139 49.6
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 3.4e-21 105.5 137 46.7
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 4.5e-21 105.1 150 43.3
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 4.5e-21 105.1 136 45.6
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 2.2e-20 102.8 135 44.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 2.9e-20 102.4 136 44.1
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.9e-20 102.4 138 44.9
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 6.5e-20 101.3 134 46.3
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 8.4e-20 100.9 135 45.2
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 1.1e-19 100.5 133 48.1
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 1.4e-19 100.1 138 44.9
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 1.9e-19 99.8 137 46.0
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 2.5e-19 99.4 138 44.2
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 3.2e-19 99.0 138 44.2
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 5.5e-19 98.2 138 44.2
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 5.5e-19 98.2 134 45.5
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 5.5e-19 98.2 138 44.2
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 5.5e-19 98.2 134 44.8
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 9.3e-19 97.4 134 44.8
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 9.3e-19 97.4 138 44.9
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 1.2e-18 97.1 136 47.8
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.2e-18 97.1 134 45.5
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.2e-18 97.1 135 42.2
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.6e-18 96.7 132 46.2
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.6e-18 96.7 139 42.4
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 1.6e-18 96.7 136 43.4
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 2.1e-18 96.3 137 43.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 2.7e-18 95.9 135 45.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 2.7e-18 95.9 122 49.2
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 3.5e-18 95.5 138 43.5
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 3.5e-18 95.5 137 43.8
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 6.0e-18 94.7 138 42.8
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 6.0e-18 94.7 118 50.0
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 6.0e-18 94.7 138 42.8
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 7.9e-18 94.4 138 42.8
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 1.0e-17 94.0 138 41.3
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 1.0e-17 94.0 138 43.5
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.3e-17 93.6 137 42.3
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-17 93.6 136 43.4
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 1.8e-17 93.2 138 43.5
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.8e-17 93.2 136 43.4
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 2.3e-17 92.8 137 40.9
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 3.9e-17 92.0 137 42.3
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 6.7e-17 91.3 138 41.3
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 6.7e-17 91.3 138 40.6
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 8.7e-17 90.9 133 43.6
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 8.7e-17 90.9 136 41.9
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 42.6
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 42.6
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 42.6
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 42.6
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 42.6
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 41.2
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 1.1e-16 90.5 136 41.2
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 3.3e-16 89.0 133 42.1
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 5.7e-16 88.2 134 42.5
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 5.7e-16 88.2 136 40.4
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 5.7e-16 88.2 142 45.1
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.3e-15 87.0 136 41.2
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 1.3e-15 87.0 113 47.8
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.2e-15 86.3 133 41.4
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.2e-15 86.3 133 41.4
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 2.8e-15 85.9 141 39.0
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 3.7e-15 85.5 142 44.4
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 8.2e-15 84.3 140 40.7
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-14 84.0 135 41.5
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.4e-14 83.6 136 40.4
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 5.3e-14 81.6 136 39.7
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 3.4e-13 79.0 134 39.6
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 4.5e-13 78.6 132 41.7
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 4.5e-13 78.6 135 38.5
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.3e-12 77.0 145 40.7
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.2e-12 76.3 133 37.6
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 5.0e-12 75.1 135 40.0
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 6.5e-12 74.7 73 53.4
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.1e-11 73.9 134 38.8
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.4e-11 73.6 137 38.0
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 5.5e-11 71.6 135 38.5
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 7.2e-11 71.2 88 48.9
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 4.6e-10 68.6 72 51.4
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 8.8e-09 64.3 88 43.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.0e-08 63.2 90 46.7
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 2.0e-08 63.2 89 42.7
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.5e-08 62.8 88 43.2
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 3.3e-08 62.4 133 32.3
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 7.4e-08 61.2 129 34.9
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 7.4e-08 61.2 88 46.6
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.3e-07 60.5 55 61.8
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 6.3e-07 58.2 86 46.5


User provided reference genes

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