Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 5.3e-142 507.7 256 100.0
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 5.3e-142 507.7 256 100.0
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 5.3e-142 507.7 256 100.0
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 4.2e-115 418.3 257 85.2
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 4.2e-115 418.3 257 85.2
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 1.6e-114 416.4 257 85.6
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 8.8e-97 357.5 265 72.5
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 7.2e-91 337.8 262 69.1
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 3.7e-87 325.5 263 66.5
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 3.8e-84 315.5 266 65.0
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 1.5e-83 313.5 267 67.0
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 1.9e-83 313.2 267 67.0
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 2.8e-82 309.3 267 65.9
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 2.8e-82 309.3 267 65.9
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 5.2e-81 305.1 264 64.0
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 3.7e-79 298.9 260 63.8
BcaNung00532 Brassica carinata HOM05D003020 ORTHO05D003226 2.1e-66 256.5 232 62.1
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 8.4e-55 218.0 274 49.3
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 2.8e-50 203.0 292 46.6
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 2.3e-44 183.3 253 48.2
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 9.0e-33 144.8 247 44.1
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 4.2e-30 136.0 260 41.5
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 8.7e-28 128.3 249 38.6
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 8.7e-28 128.3 252 39.3
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 3.3e-27 126.3 253 39.1
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 5.6e-27 125.6 249 38.6
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 7.4e-27 125.2 252 38.5
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 1.3e-26 124.4 241 39.0
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 1.3e-26 124.4 247 38.1
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.3e-26 124.4 249 40.2
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 6.2e-26 122.1 259 39.8
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 6.2e-26 122.1 249 39.4
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 8.2e-26 121.7 251 39.0
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 5.3e-25 119.0 247 37.7
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 6.9e-25 118.6 254 36.6
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 9.0e-25 118.2 268 36.2
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 7.6e-24 115.2 243 37.4
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 1.3e-23 114.4 244 39.8
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 1.7e-23 114.0 243 37.9
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 2.9e-23 113.2 248 36.7
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 3.8e-23 112.8 288 34.7
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 3.8e-23 112.8 243 37.0
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 4.9e-23 112.5 246 36.2
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 4.9e-23 112.5 239 35.1
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 4.9e-23 112.5 280 36.8
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.5e-23 112.1 257 35.0
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.1e-22 111.3 239 35.6
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 1.9e-22 110.5 231 39.0
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 3.2e-22 109.8 285 33.0
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 3.2e-22 109.8 253 34.8
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 7.1e-22 108.6 243 33.7
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.6e-21 107.5 253 34.4
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 3.5e-21 106.3 253 34.4
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 7.9e-21 105.1 262 33.2
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 7.9e-21 105.1 233 36.9
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 1.3e-20 104.4 208 38.0
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 1.8e-20 104.0 248 36.3
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 1.8e-20 104.0 239 35.1
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 3.0e-20 103.2 240 35.4
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 3.0e-20 103.2 241 35.3
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.0e-20 103.2 241 34.0
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 3.0e-20 103.2 270 33.7
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 3.9e-20 102.8 230 37.4
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 8.7e-20 101.7 247 34.8
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 1.5e-19 100.9 272 32.4
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 1.9e-19 100.5 211 38.4
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 1.9e-19 100.5 204 37.7
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 4.3e-19 99.4 253 34.0
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 1.6e-18 97.4 250 32.4
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 1.6e-18 97.4 250 32.4
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.6e-18 97.4 246 35.0
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.2e-18 97.1 242 33.5
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.8e-18 96.7 252 32.9
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 3.7e-18 96.3 233 32.6
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.3e-18 95.5 251 33.1
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.3e-18 95.5 252 32.5
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 8.2e-18 95.1 152 41.4
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 8.2e-18 95.1 237 33.8
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.4e-17 94.4 250 34.0
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 1.4e-17 94.4 261 32.6
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 3.1e-17 93.2 251 34.7
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.2e-16 91.3 241 33.6
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 1.5e-16 90.9 204 36.3
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 2.0e-16 90.5 240 32.9
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 2.0e-16 90.5 195 35.9
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 4.5e-16 89.4 248 31.0
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 2.2e-15 87.0 232 37.5
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.2e-15 87.0 262 29.4
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 5.0e-15 85.9 290 31.4
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.4e-14 84.3 248 34.3
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.4e-14 84.3 238 33.2
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.4e-14 84.3 249 34.9
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 4.2e-14 82.8 219 32.4
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 9.4e-14 81.6 235 34.5
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.2e-13 81.3 263 32.3
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 2.1e-13 80.5 243 32.5
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 3.6e-13 79.7 243 33.3
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 6.1e-13 79.0 244 29.5
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 1.0e-12 78.2 261 29.9
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.9e-12 76.3 237 32.5
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 5.1e-12 75.9 248 31.5
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 5.1e-12 75.9 248 30.2
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.3e-10 71.2 243 32.5
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.3e-10 71.2 247 32.0
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 4.8e-10 69.3 206 34.5
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 4.8e-10 69.3 220 29.5
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 8.2e-10 68.6 232 29.7
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.1e-09 66.2 222 28.4
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 5.3e-09 65.9 226 28.3
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 5.3e-09 65.9 229 28.4
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 6.9e-09 65.5 236 30.1
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 6.9e-09 65.5 236 30.1
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 6.9e-09 65.5 285 26.7
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.5e-08 64.3 186 28.5
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.4e-08 63.2 223 28.3
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 1.3e-07 61.2 187 32.1
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.2e-07 60.5 216 31.5
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.2e-07 60.5 186 31.2
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.9e-07 60.1 244 28.7
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.9e-07 60.1 258 28.3
Migut.K00242 Erythranthe guttata HOM05D003020 ORTHO05D003226 5.0e-07 59.3 272 28.7
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 5.0e-07 59.3 206 28.6
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 8.5e-07 58.5 256 26.2
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.5e-07 58.5 256 26.2
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 1.4e-06 57.8 184 30.4
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 1.9e-06 57.4 224 29.5
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 7.2e-06 55.5 252 29.4


User provided reference genes

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