Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08570 Brassica napus HOM05D003946 ORTHO05D004485 4.7e-49 197.6 103 100.0
A01p07700 Brassica napus HOM05D003946 ORTHO05D004485 4.0e-48 194.5 103 99.0
BraA01t00713Z Brassica rapa HOM05D003946 ORTHO05D004485 4.0e-48 194.5 103 99.0
CARHR238370 Cardamine hirsuta HOM05D003946 ORTHO05D004485 3.1e-32 141.7 77 94.8
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 1.2e-31 139.8 77 93.5
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 1.2e-31 139.8 77 93.5
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 9.9e-31 136.7 77 89.6
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 9.9e-31 136.7 78 87.2
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 9.9e-31 136.7 78 87.2
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 1.3e-30 136.3 77 89.6
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 8.3e-30 133.7 78 84.6
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 8.3e-30 133.7 78 84.6
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 1.1e-29 133.3 78 85.9
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.4e-29 132.9 78 85.9
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.4e-29 132.9 78 85.9
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 1.4e-29 132.9 78 87.2
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 1.4e-29 132.9 78 87.2
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.4e-29 132.9 78 85.9
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.9e-29 132.5 78 84.6
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.4e-29 132.1 78 84.6
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.2e-28 129.8 78 84.6
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.2e-28 129.8 78 83.3
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.6e-28 129.4 78 83.3
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 4.6e-28 127.9 78 82.1
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 7.8e-28 127.1 78 82.1
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 7.8e-28 127.1 78 82.1
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 1.0e-27 126.7 77 83.1
Eucgr.C00110 Eucalyptus grandis HOM05D003946 ORTHO05D004485 1.3e-27 126.3 78 83.3
BolC1t00839H Brassica oleracea HOM05D003946 ORTHO05D004485 1.7e-27 125.9 72 95.8
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.3e-27 125.6 77 83.1
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 2.3e-27 125.6 77 81.8
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 2.3e-27 125.6 78 80.8
Thhalv10025952m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 3.9e-27 124.8 66 97.0
Sp7g28360 Schrenkiella parvula HOM05D003946 ORTHO05D004485 3.9e-27 124.8 66 97.0
MELO3C004108.2 Cucumis melo HOM05D003946 ORTHO05D004485 6.6e-27 124.0 77 80.5
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 6.6e-27 124.0 77 80.5
Gohir.A05G007100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 6.6e-27 124.0 78 78.2
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 6.6e-27 124.0 78 78.2
Sed0010600 Sechium edule HOM05D003946 ORTHO05D004485 6.6e-27 124.0 77 81.8
ClCG11G012680 Citrullus lanatus HOM05D003946 ORTHO05D004485 1.5e-26 122.9 77 79.2
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 1.9e-26 122.5 78 78.2
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 1.9e-26 122.5 78 78.2
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 1.9e-26 122.5 77 79.2
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 1.9e-26 122.5 78 79.5
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 2.5e-26 122.1 78 80.8
C07p57950 Brassica napus HOM05D003946 ORTHO05D004485 4.3e-26 121.3 66 92.4
BolC7t46253H Brassica oleracea HOM05D003946 ORTHO05D004485 4.3e-26 121.3 66 92.4
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.3e-26 121.3 78 78.2
Peaxi162Scf00038g00224 Petunia axillaris HOM05D003946 ORTHO05D004485 5.6e-26 120.9 77 80.5
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 7.3e-26 120.6 78 76.9
SEGI_31472 Sequoiadendron giganteum HOM05D003946 ORTHO05D004485 7.3e-26 120.6 78 76.9
Thhalv10000290m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 9.5e-26 120.2 66 92.4
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.6e-25 119.4 79 77.2
AL4G13950 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 2.1e-25 119.0 66 92.4
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 2.8e-25 118.6 78 76.9
BcaC02g08518 Brassica carinata HOM05D003946 ORTHO05D004485 3.6e-25 118.2 66 89.4
C04p53510 Brassica napus HOM05D003946 ORTHO05D004485 3.6e-25 118.2 66 89.4
Thecc.09G157800 Theobroma cacao HOM05D003946 ORTHO05D004485 6.2e-25 117.5 66 90.9
THA.LOC104803531 Tarenaya hassleriana HOM05D003946 ORTHO05D004485 1.1e-24 116.7 66 86.4
BraA04t17439Z Brassica rapa HOM05D003946 ORTHO05D004485 1.4e-24 116.3 66 89.4
Ciclev10010190m.g Citrus clementina HOM05D003946 ORTHO05D004485 1.8e-24 115.9 82 70.7
Duzib187G0180 Durio zibethinus HOM05D003946 ORTHO05D004485 2.4e-24 115.5 66 87.9
Duzib187G0394 Durio zibethinus HOM05D003946 ORTHO05D004485 2.4e-24 115.5 66 87.9
QL02p094618 Quercus lobata HOM05D003946 ORTHO05D004485 2.4e-24 115.5 64 89.1
A04p18280 Brassica napus HOM05D003946 ORTHO05D004485 3.1e-24 115.2 66 87.9
Sp4g02820 Schrenkiella parvula HOM05D003946 ORTHO05D004485 3.1e-24 115.2 66 87.9
Cpa.g.sc37.157 Carica papaya HOM05D003946 ORTHO05D004485 4.0e-24 114.8 66 86.4
Aqoxy3G01561 Aquilegia oxysepala HOM05D003946 ORTHO05D004485 5.2e-24 114.4 66 87.9
Duzib150G0638 Durio zibethinus HOM05D003946 ORTHO05D004485 5.2e-24 114.4 66 86.4
CiPaw.10G166500 Carya illinoinensis HOM05D003946 ORTHO05D004485 8.9e-24 113.6 66 87.9
Oeu024902.1 Olea europaea HOM05D003946 ORTHO05D004485 1.2e-23 113.2 71 83.1
Potri.006G178900 Populus trichocarpa HOM05D003946 ORTHO05D004485 1.2e-23 113.2 66 84.8
FvH4_3g34740 Fragaria vesca HOM05D003946 ORTHO05D004485 2.0e-23 112.5 66 86.4
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.0e-23 112.5 66 86.4
FAN15G3651 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.0e-23 112.5 66 86.4
FAN16G0870 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.0e-23 112.5 66 86.4
Atru.chr7.424 Acer truncatum HOM05D003946 ORTHO05D004485 2.6e-23 112.1 66 84.8
RcHm_v2.0_Chr4g0405181 Rosa chinensis HOM05D003946 ORTHO05D004485 2.6e-23 112.1 66 86.4
MD04G1009600 Malus domestica HOM05D003946 ORTHO05D004485 3.4e-23 111.7 66 86.4
Nitab4.5_0002545g0010 Nicotiana tabacum HOM05D003946 ORTHO05D004485 4.4e-23 111.3 66 84.8
Peaxi162Scf00038g00222 Petunia axillaris HOM05D003946 ORTHO05D004485 4.4e-23 111.3 66 84.8
FAN25G1583 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.8e-23 110.9 66 84.8
FAN27G0955 Fragaria x ananassa HOM05D003946 ORTHO05D004485 7.6e-23 110.5 66 83.3
Glyma.13G354200 Glycine max HOM05D003946 ORTHO05D004485 7.6e-23 110.5 78 74.4
SGA_v2.0_scaffold293G47418 Striga asiatica HOM05D003946 ORTHO05D004485 7.6e-23 110.5 66 86.4
TWI34G0749 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 7.6e-23 110.5 66 81.8
unitig_62.g23482 Utricularia gibba HOM05D003946 ORTHO05D004485 7.6e-23 110.5 66 86.4
HPP92_017289 Vanilla planifolia HOM05D003946 ORTHO05D004485 7.6e-23 110.5 69 78.3
Actinidia18308 Actinidia chinensis HOM05D003946 ORTHO05D004485 9.9e-23 110.2 64 85.9
Cfa012892 Carpinus fangiana HOM05D003946 ORTHO05D004485 9.9e-23 110.2 66 81.8
Cc06_g14380 Coffea canephora HOM05D003946 ORTHO05D004485 1.3e-22 109.8 68 82.4
Haze_21259 Corylus avellana HOM05D003946 ORTHO05D004485 1.3e-22 109.8 66 81.8
Nitab4.5_0003269g0040 Nicotiana tabacum HOM05D003946 ORTHO05D004485 1.3e-22 109.8 66 83.3
Prupe.8G039000 Prunus persica HOM05D003946 ORTHO05D004485 1.3e-22 109.8 66 84.8
SalBow6G3589 Salvia bowleyana HOM05D003946 ORTHO05D004485 1.3e-22 109.8 66 86.4
TWI63G1262 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 1.3e-22 109.8 66 81.8
Ah.14g084270 Amaranthus hybridus HOM05D003946 ORTHO05D004485 2.9e-22 108.6 66 84.8
HanXRQChr03g0065991 Helianthus annuus HOM05D003946 ORTHO05D004485 2.9e-22 108.6 66 84.8
Os10g0486900 Oryza sativa ssp. japonica HOM05D003946 ORTHO05D004485 2.9e-22 108.6 66 80.3
MD16G1260600 Malus domestica HOM05D003946 ORTHO05D004485 3.8e-22 108.2 66 83.3
Prupe.1G099700 Prunus persica HOM05D003946 ORTHO05D004485 3.8e-22 108.2 66 81.8
Migut.K00288 Erythranthe guttata HOM05D003946 ORTHO05D004485 6.4e-22 107.5 66 81.8
Ah.09g228630 Amaranthus hybridus HOM05D003946 ORTHO05D004485 8.4e-22 107.1 66 83.3
Ciclev10009155m.g Citrus clementina HOM05D003946 ORTHO05D004485 8.4e-22 107.1 66 81.8
COL.COLO4_10067 Corchorus olitorius HOM05D003946 ORTHO05D004485 8.4e-22 107.1 64 81.2
Rhsim03G0261300 Rhododendron simsii HOM05D003946 ORTHO05D004485 8.4e-22 107.1 64 81.2
vmacro06046 Vaccinium macrocarpon HOM05D003946 ORTHO05D004485 8.4e-22 107.1 64 81.2
HanXRQChr09g0244711 Helianthus annuus HOM05D003946 ORTHO05D004485 1.1e-21 106.7 66 81.8
Sabra06G0135900 Salix brachista HOM05D003946 ORTHO05D004485 1.1e-21 106.7 65 80.0
EL10Ac8g18885 Beta vulgaris HOM05D003946 ORTHO05D004485 1.4e-21 106.3 66 81.8
DCAR_014726 Daucus carota HOM05D003946 ORTHO05D004485 1.4e-21 106.3 76 69.7
Sed0007467 Sechium edule HOM05D003946 ORTHO05D004485 1.4e-21 106.3 66 78.8
Actinidia38658 Actinidia chinensis HOM05D003946 ORTHO05D004485 1.9e-21 105.9 64 84.4
CAN.G1190.24 Capsicum annuum HOM05D003946 ORTHO05D004485 1.9e-21 105.9 66 81.8
Potri.018G100700 Populus trichocarpa HOM05D003946 ORTHO05D004485 1.9e-21 105.9 66 78.8
Sc18g0003220 Simmondsia chinensis HOM05D003946 ORTHO05D004485 1.9e-21 105.9 66 81.8
PGSC0003DMG400011219 Solanum tuberosum HOM05D003946 ORTHO05D004485 1.9e-21 105.9 66 80.3
Zm00001eb060560 Zea mays HOM05D003946 ORTHO05D004485 1.9e-21 105.9 66 78.8
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 2.4e-21 105.5 80 62.5
AUR62028392 Chenopodium quinoa HOM05D003946 ORTHO05D004485 2.4e-21 105.5 66 81.8
Hma1.2p1_2732F.1_g327665 Hydrangea macrophylla HOM05D003946 ORTHO05D004485 2.4e-21 105.5 72 77.8
Lj9A725T27 Lonicera japonica HOM05D003946 ORTHO05D004485 3.2e-21 105.1 64 84.4
Zm00001eb365370 Zea mays HOM05D003946 ORTHO05D004485 3.2e-21 105.1 66 78.8
Lsat_1_v5_gn_5_88241 Lactuca sativa HOM05D003946 ORTHO05D004485 4.2e-21 104.8 65 78.5
Solyc07g006180.3 Solanum lycopersicum HOM05D003946 ORTHO05D004485 4.2e-21 104.8 66 80.3
Sopen07g002290 Solanum pennellii HOM05D003946 ORTHO05D004485 4.2e-21 104.8 66 80.3
CAN.G363.9 Capsicum annuum HOM05D003946 ORTHO05D004485 7.1e-21 104.0 66 80.3
Dinv42798 Davidia involucrata HOM05D003946 ORTHO05D004485 2.1e-20 102.4 64 81.2
Dinv43303 Davidia involucrata HOM05D003946 ORTHO05D004485 2.1e-20 102.4 64 81.2
Mapoly0119s0026 Marchantia polymorpha HOM05D003946 ORTHO05D004485 2.1e-20 102.4 78 66.7
SMO361G0476 Selaginella moellendorffii HOM05D003946 ORTHO05D004485 4.6e-20 101.3 64 73.4
Nn8g40208 Nelumbo nucifera HOM05D003946 ORTHO05D004485 6.0e-20 100.9 58 86.2
GSVIVG01023716001 Vitis vinifera HOM05D003946 ORTHO05D004485 6.0e-20 100.9 66 77.3
Lsat_1_v5_gn_7_51160 Lactuca sativa HOM05D003946 ORTHO05D004485 1.0e-19 100.1 66 75.8
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 3.0e-19 98.6 63 79.4
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 6.6e-19 97.4 77 67.5
Cc00_g22900 Coffea canephora HOM05D003946 ORTHO05D004485 3.3e-18 95.1 74 64.9
Cc00_g34860 Coffea canephora HOM05D003946 ORTHO05D004485 3.3e-18 95.1 74 64.9
Pp3c8_13040 Physcomitrium patens HOM05D003946 ORTHO05D004485 1.6e-17 92.8 63 68.3
Cre02.g075100 Chlamydomonas reinhardtii HOM05D003946 ORTHO05D004485 2.4e-16 89.0 78 55.1
BolC4t26905H Brassica oleracea HOM05D003946 ORTHO05D004485 4.0e-16 88.2 50 88.0
Glyma.08G356700 Glycine max HOM05D003946 ORTHO05D004485 7.6e-15 84.0 66 68.2
AUR62039767 Chenopodium quinoa HOM05D003946 ORTHO05D004485 2.4e-13 79.0 77 58.4
BcaNung02985 Brassica carinata HOM05D003946 ORTHO05D004485 7.1e-13 77.4 63 66.7
MCO12G083 Micromonas commoda HOM05D003946 ORTHO05D004485 7.1e-13 77.4 76 52.6
PRCOL_00003553 Prasinoderma coloniale HOM05D003946 ORTHO05D004485 2.7e-12 75.5 63 57.1
BcaNung00558 Brassica carinata HOM05D003946 ORTHO05D004485 3.5e-12 75.1 60 68.3
FvH4_4g08690 Fragaria vesca HOM05D003946 ORTHO05D004485 1.0e-11 73.6 52 75.0
ATR0763G121 Amborella trichopoda HOM05D003946 ORTHO05D004485 3.0e-11 72.0 38 86.8
arahy.Tifrunner.gnm1.ann1.43EHF4 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.9e-10 69.3 64 64.1
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 8.1e-09 63.9 41 80.5
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 8.1e-09 63.9 41 80.5
arahy.Tifrunner.gnm1.ann1.H72Z00 Arachis hypogaea HOM05D003946 ORTHO05D005257 3.1e-08 62.0 42 73.8
arahy.Tifrunner.gnm1.ann1.TB3RSS Arachis hypogaea HOM05D003946 ORTHO05D004485 3.1e-08 62.0 42 73.8
AagrBONN_evm.TU.Sc2ySwM_117.755 Anthoceros agrestis HOM05D003946 ORTHO05D004485 1.2e-07 60.1 34 82.4
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.0e-07 59.3 41 75.6
ATR0763G144 Amborella trichopoda HOM05D003946 ORTHO05D004485 3.4e-07 58.5 39 76.9
arahy.Tifrunner.gnm1.ann1.9J99EW Arachis hypogaea HOM05D003946 ORTHO05D004485 4.5e-07 58.2 35 82.9
CAN.G346.10 Capsicum annuum HOM05D003946 ORTHO05D013825 4.5e-07 58.2 53 60.4
Duzib168G2206 Durio zibethinus HOM05D003946 ORTHO05D004485 8.4e-06 53.9 62 50.0


User provided reference genes

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