Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 3.8e-91 338.2 174 100.0
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-88 330.1 174 97.7
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 6.7e-88 327.4 174 96.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 8.7e-88 327.0 173 96.0
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 3.3e-87 325.1 174 94.3
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 3.3e-87 325.1 174 94.3
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 3.3e-87 325.1 174 94.3
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 3.3e-87 325.1 174 94.3
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 9.6e-87 323.6 174 93.7
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 2.1e-86 322.4 174 93.1
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 6.2e-86 320.9 174 93.1
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 6.9e-85 317.4 174 90.8
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-83 313.2 166 95.2
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-83 311.2 166 94.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 6.7e-80 300.8 174 86.8
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 85.1
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 8.7e-80 300.4 174 86.2
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 5.6e-79 297.7 174 85.1
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.6e-76 288.9 151 94.7
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 4.5e-76 288.1 174 82.8
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.8e-76 287.7 174 82.2
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.0e-75 287.0 171 85.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 81.0
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.7e-73 278.9 174 79.9
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 1.3e-72 276.6 174 78.2
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 76.4
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 76.4
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 74.1
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 74.1
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 76.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 74.1
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 73.0
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 75.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 73.0
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.6
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.6
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.6
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.8e-69 266.2 175 75.4
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.0
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.3
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.9
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.3
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 73.6
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 73.6
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 73.0
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 73.6
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 74.1
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 73.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 72.4
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 72.4
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 74.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 72.4
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 71.3
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 73.0
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 71.8
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.8
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 71.3
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.4e-66 256.5 174 73.6
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.9e-66 256.1 194 66.0
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 71.8
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.3
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 71.8
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 71.8
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 71.3
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 70.1
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 70.1
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.3
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 70.7
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 70.7
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.3e-64 249.2 175 70.9
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 3.9e-64 248.4 174 68.4
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 70.7
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 70.7
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 67.8
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 67.8
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 70.1
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 9.7e-63 243.8 198 63.6
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 69.5
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 66.7
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 65.5
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 67.2
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.4e-61 239.2 171 67.8
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 67.2
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 66.1
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 5.9e-60 234.6 171 67.3
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 68.4
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 1.0e-59 233.8 175 68.6
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.5e-59 230.7 156 69.2
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 67.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 67.2
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 67.2
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 66.7
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.4e-58 229.9 158 70.3
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.6e-57 226.5 143 72.7
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 64.4
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 63.8
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.0e-55 219.5 174 63.2
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.3e-55 218.8 173 61.3
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 4.4e-55 218.4 174 63.2
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 2.2e-54 216.1 146 71.9
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.4e-53 212.6 174 60.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 1.7e-51 206.5 174 58.0
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.0e-51 204.9 174 59.2
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 6.5e-51 204.5 174 60.9
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 8.5e-51 204.1 147 69.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.4e-50 203.4 174 60.3
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 9.4e-50 200.7 176 63.1
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.2e-49 200.3 174 58.0
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.0e-49 197.6 122 73.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 8.0e-49 197.6 122 74.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 5.2e-48 194.9 122 71.3
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.6e-47 192.6 196 52.6
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.2e-46 189.5 171 56.7
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.8e-46 189.1 171 56.7
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 3.1e-45 185.7 175 54.3
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 9.1e-45 184.1 171 57.3
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 3.5e-44 182.2 182 54.9
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.5e-43 177.6 239 43.1
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.4e-40 170.2 174 51.7
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.4e-37 160.2 177 49.7
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.2e-36 157.1 94 75.5
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 1.6e-36 156.8 119 68.9
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.6e-36 156.8 95 72.6
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.0e-36 156.4 157 60.5
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.0e-36 156.4 173 50.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.3e-35 153.7 94 73.4
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 1.5e-34 150.2 173 43.9
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.9e-34 149.8 93 74.2
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.7e-30 136.7 128 60.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 4.8e-30 135.2 96 64.6
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 7.0e-21 104.8 168 36.9
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 5.9e-20 101.7 81 55.6
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 7.3e-18 94.7 85 56.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 9.5e-18 94.4 55 72.7
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 6.8e-16 88.2 176 30.1
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.5e-15 87.0 53 71.7
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.9e-14 82.0 48 72.9
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.6e-11 71.2 94 44.7
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.9e-10 70.1 38 76.3
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.3e-10 69.3 157 34.4
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.6e-09 67.0 173 28.9
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.8e-08 63.5 50 64.0


User provided reference genes

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