Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08300 Brassica napus HOM05D015591 ORTHO05D000001 7.2e-231 803.5 396 100.0
BolC1t00816H Brassica oleracea HOM05D015591 ORTHO05D000001 6.7e-229 797.0 396 99.0
A01p07620 Brassica napus HOM05D015591 ORTHO05D000001 3.4e-212 741.5 399 93.0
BraA01t00705Z Brassica rapa HOM05D015591 ORTHO05D000001 2.2e-211 738.8 399 92.7
BcaC09g51856 Brassica carinata HOM05D015591 ORTHO05D000001 3.9e-192 674.9 361 92.8
BcaC09g51855 Brassica carinata HOM05D015591 ORTHO05D000001 5.3e-157 558.1 293 96.2
Sp7g28540 Schrenkiella parvula HOM05D015591 ORTHO05D000001 5.9e-116 421.8 379 62.5
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.8e-41 173.7 262 40.1
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.1e-26 125.2 144 49.3
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.6e-25 121.3 149 47.0
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 6.9e-24 115.9 134 45.5
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 9.0e-24 115.5 244 32.4
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.7e-22 111.3 144 45.8
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 1.1e-21 108.6 134 44.0
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 1.1e-21 108.6 134 44.0
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 1.1e-21 108.6 134 44.0
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 1.9e-21 107.8 308 29.5
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.3e-19 100.9 181 35.4
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.3e-19 100.9 234 34.2
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 5.1e-19 99.8 124 40.3
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.1e-19 99.8 124 40.3
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 6.7e-19 99.4 198 35.9
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.7e-18 96.3 149 37.6
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.7e-18 96.3 287 28.2
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 9.7e-18 95.5 126 38.1
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-17 95.1 126 37.3
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-17 95.1 126 37.3
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 1.7e-17 94.7 109 46.8
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.2e-17 94.4 210 34.3
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.8e-17 93.2 126 37.3
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 6.3e-17 92.8 126 38.1
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 8.2e-17 92.4 396 24.2
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.1e-16 92.0 126 36.5
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 1.4e-16 91.7 227 30.4
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 2.4e-16 90.9 279 28.3
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 9.1e-16 89.0 195 31.8
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 1.2e-15 88.6 149 39.6
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.2e-15 88.6 126 38.1
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-15 88.2 126 38.9
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.5e-15 88.2 199 31.7
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 2.0e-15 87.8 126 37.3
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 4.5e-15 86.7 199 31.7
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 7.7e-15 85.9 202 34.2
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 7.7e-15 85.9 210 32.4
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.0e-14 85.5 194 33.0
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 1.0e-14 85.5 245 29.4
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 1.3e-14 85.1 124 38.7
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.2e-14 84.3 191 31.4
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 2.2e-14 84.3 126 34.9
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.8e-14 83.6 188 33.0
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 5.0e-14 83.2 175 33.7
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 8.5e-14 82.4 188 31.4
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 1.9e-13 81.3 190 31.1
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.2e-13 80.5 164 32.3
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 3.2e-13 80.5 192 31.2
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 4.2e-13 80.1 191 31.4
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 5.5e-13 79.7 126 35.7
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 5.5e-13 79.7 186 31.7
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 9.4e-13 79.0 191 29.8
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 2.7e-12 77.4 167 32.9
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 2.7e-12 77.4 207 29.0
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 3.6e-12 77.0 178 32.6
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 4.7e-12 76.6 126 35.7
BcaC01g02795 Brassica carinata HOM05D003210 ORTHO05D032134 6.1e-12 76.3 192 29.7
Migut.N00641 Erythranthe guttata HOM05D008810 ORTHO05D010971 1.0e-11 75.5 290 25.9
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.4e-11 75.1 126 30.2
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 1.8e-11 74.7 159 33.3
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.8e-11 74.7 178 32.0
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 1.8e-11 74.7 175 26.3
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.8e-11 74.7 208 29.8
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.8e-11 74.7 214 31.3
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.0e-11 73.9 219 26.9
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 3.9e-11 73.6 181 31.5
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 3.9e-11 73.6 193 30.6
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 6.7e-11 72.8 149 37.6
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-10 71.6 212 27.8
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 4.4e-10 70.1 240 27.1
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 7.4e-10 69.3 61 55.7
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 9.7e-10 68.9 182 29.7
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.3e-09 68.6 126 30.2
C03p60250 Brassica napus HOM05D003210 ORTHO05D000001 1.7e-09 68.2 145 31.7
BolC3t18286H Brassica oleracea HOM05D003210 ORTHO05D000001 1.7e-09 68.2 145 31.7
Ciclev10018778m.g Citrus clementina HOM05D008810 ORTHO05D010971 1.7e-09 68.2 278 25.5
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.7e-09 68.2 204 24.5
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 2.2e-09 67.8 149 26.8
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.2e-09 67.8 207 29.5
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.8e-09 67.4 181 29.3
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.8e-09 67.4 238 29.4
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 4.8e-09 66.6 177 29.9
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 4.8e-09 66.6 177 29.9
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 4.8e-09 66.6 238 29.0
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 6.3e-09 66.2 176 30.7
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 8.2e-09 65.9 209 24.9
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 8.2e-09 65.9 149 26.8
Cpa.g.sc8.119 Carica papaya HOM05D008810 ORTHO05D010971 1.1e-08 65.5 129 34.9
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 1.1e-08 65.5 130 32.3
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 1.4e-08 65.1 149 26.8
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 1.8e-08 64.7 219 26.9
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 3.1e-08 63.9 178 28.1
CARHR081940 Cardamine hirsuta HOM05D008810 ORTHO05D010971 4.1e-08 63.5 241 27.0
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 4.1e-08 63.5 131 32.1
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 5.3e-08 63.2 163 25.2
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 5.3e-08 63.2 149 26.8
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 7.0e-08 62.8 184 26.1
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 7.0e-08 62.8 126 30.2
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 9.1e-08 62.4 126 29.4
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 1.2e-07 62.0 227 25.1
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.0e-07 61.2 146 28.8
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 2.6e-07 60.8 252 24.2
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 4.5e-07 60.1 179 24.6
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 4.5e-07 60.1 262 25.6
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 5.9e-07 59.7 174 27.0
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 7.7e-07 59.3 258 22.9
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 7.7e-07 59.3 165 26.1
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 7.7e-07 59.3 184 29.9
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 1.0e-06 58.9 256 24.2
MD07G1059400 Malus domestica HOM05D002890 ORTHO05D009847 1.0e-06 58.9 255 23.5
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.0e-06 58.9 138 26.1
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.3e-06 58.5 143 25.2
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 1.3e-06 58.5 235 27.2
ECA247G1303 Erigeron canadensis HOM05D002453 ORTHO05D002107 1.7e-06 58.2 171 25.7
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 1.7e-06 58.2 204 25.0
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.7e-06 58.2 150 25.3
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.7e-06 58.2 147 25.9
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 2.2e-06 57.8 220 20.0
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 2.2e-06 57.8 131 30.5
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 2.9e-06 57.4 151 29.8
FAN25G3795 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.9e-06 57.4 209 26.3
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 2.9e-06 57.4 256 24.2
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 2.9e-06 57.4 261 21.8
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 2.9e-06 57.4 216 21.8
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.8e-06 57.0 167 28.1
Glyma.03G022100 Glycine max HOM05D000001 ORTHO05D009097 3.8e-06 57.0 271 23.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.8e-06 57.0 209 26.8
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.0e-06 56.6 221 22.2
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 6.5e-06 56.2 127 24.4
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 6.5e-06 56.2 158 27.2
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 6.5e-06 56.2 266 26.7
Os06g0690900 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 8.5e-06 55.8 128 26.6


User provided reference genes

Program Settings