Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 2.2e-193 678.7 323 100.0
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 8.3e-193 676.8 323 99.7
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 1.8e-192 675.6 323 99.4
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 2.4e-192 675.2 323 99.4
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 2.4e-192 675.2 323 99.4
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 4.4e-178 627.9 323 92.6
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 1.4e-171 606.3 323 90.7
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 6.8e-171 604.0 320 90.3
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 9.2e-168 593.6 320 88.1
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.1e-167 592.4 320 87.8
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 3.0e-166 588.6 320 87.8
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 1.1e-165 586.6 321 87.9
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.3e-161 573.2 311 88.1
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 3.3e-157 558.5 320 80.9
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.6e-156 556.2 320 80.3
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 1.6e-156 556.2 309 82.5
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 6.2e-156 554.3 308 83.1
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.4e-155 553.1 309 81.9
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 4.0e-155 551.6 309 82.8
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 9.0e-155 550.4 309 83.2
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.2e-154 550.1 312 82.7
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 1.2e-154 550.1 308 83.1
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.2e-154 550.1 312 81.7
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.5e-154 549.7 315 82.5
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 4.5e-154 548.1 309 82.2
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.5e-154 548.1 320 79.7
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 5.8e-154 547.7 308 82.5
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.7e-153 546.2 311 82.0
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.2e-153 545.8 309 82.5
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 4.9e-153 544.7 309 81.6
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 8.4e-153 543.9 311 81.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 8.4e-153 543.9 307 81.8
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 4.2e-152 541.6 311 80.4
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 5.4e-152 541.2 320 79.4
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 2.7e-151 538.9 311 80.7
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 4.6e-151 538.1 323 79.3
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 4.6e-151 538.1 314 79.0
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 7.9e-151 537.3 323 79.3
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-150 536.2 308 80.8
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 3.0e-150 535.4 312 80.8
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 3.9e-150 535.0 302 82.1
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 8.7e-150 533.9 309 79.9
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 7.4e-149 530.8 315 79.4
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 9.6e-149 530.4 313 79.2
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 9.6e-149 530.4 319 77.4
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 9.6e-149 530.4 311 80.1
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.3e-148 530.0 308 80.5
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 2.8e-148 528.9 309 79.9
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 8.1e-148 527.3 310 79.4
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 1.8e-147 526.2 305 80.3
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 5.3e-147 524.6 308 79.5
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 9.0e-147 523.9 308 79.2
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.5e-146 523.1 308 79.2
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 2.0e-146 522.7 317 77.9
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 4.9e-145 518.1 312 77.6
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 6.4e-145 517.7 308 76.9
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.1e-144 516.9 313 77.0
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.9e-144 516.2 301 78.7
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 4.2e-144 515.0 309 77.7
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 5.5e-144 514.6 308 76.3
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 2.3e-142 509.2 308 76.9
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 5.3e-139 498.0 312 74.7
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.3e-139 498.0 313 75.1
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 9.0e-139 497.3 360 66.4
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 2.0e-138 496.1 311 75.9
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 2.2e-137 492.7 308 76.0
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 4.6e-135 485.0 409 60.4
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 1.0e-134 483.8 290 77.2
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 2.3e-134 482.6 310 71.6
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 3.4e-130 468.8 271 81.5
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 4.5e-130 468.4 272 81.2
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 7.6e-130 467.6 269 81.0
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.4e-128 463.4 298 72.1
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 8.2e-124 447.6 308 68.8
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.8e-123 446.4 327 66.4
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.9e-121 439.1 261 77.4
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 7.9e-119 431.0 310 66.5
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 2.3e-118 429.5 321 65.1
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 5.3e-115 418.3 307 61.2
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.4e-114 415.6 254 75.6
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 2.2e-108 396.4 332 61.4
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.1e-95 351.7 311 57.6
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 9.8e-93 344.4 184 84.2
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 4.8e-92 342.0 281 61.9
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 5.7e-85 318.5 186 78.0
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 4.9e-84 315.5 161 88.2
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 8.3e-84 314.7 172 82.6
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 1.8e-83 313.5 160 87.5
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 5.4e-83 312.0 161 85.7
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 9.2e-83 311.2 161 87.6
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 2.7e-82 309.7 163 85.9
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 3.5e-82 309.3 160 86.2
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 4.5e-82 308.9 160 86.9
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 6.6e-81 305.1 161 83.2
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 2.5e-80 303.1 160 85.0
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 9.5e-80 301.2 163 82.8
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.6e-79 300.4 165 81.2
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 2.1e-79 300.1 172 78.5
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 3.6e-79 299.3 191 76.4
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 1.8e-78 297.0 160 82.5
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 2.4e-75 286.6 253 52.6
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 2.1e-71 273.5 178 71.9
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 3.9e-65 252.7 136 83.1
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.1e-54 218.0 117 83.8
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.8e-54 217.2 117 82.1
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 3.1e-54 216.5 117 82.1
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 5.2e-54 215.7 117 84.6
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 4.4e-53 212.6 117 84.6
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.3e-52 211.1 127 76.4
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 2.9e-52 209.9 122 76.2
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 1.4e-51 207.6 117 83.8
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 1.9e-51 207.2 117 82.1
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 1.9e-51 207.2 127 77.2
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 2.4e-51 206.8 117 81.2
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 3.2e-51 206.5 117 82.9
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 3.0e-49 199.9 117 76.9
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 5.1e-49 199.1 117 78.6
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 3.3e-48 196.4 104 80.8
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.1e-46 191.4 104 81.7
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 5.2e-46 189.1 117 73.5
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.5e-45 187.6 118 75.4
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 1.7e-44 184.1 137 67.2
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.3e-32 143.3 69 94.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 1.3e-31 141.4 89 67.4
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 2.0e-29 134.0 82 72.0
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.0e-26 122.5 66 84.8
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-25 120.9 246 33.3
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 2.5e-24 117.1 73 72.6
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.0e-21 107.5 71 73.2
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 7.4e-16 89.0 52 69.2
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 2.8e-15 87.0 46 80.4
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 9.0e-14 82.0 47 74.5
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 2.5e-11 73.9 40 77.5
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 2.5e-08 63.9 56 58.9
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 6.3e-07 59.3 29 86.2


User provided reference genes

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