Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 1.9e-87 325.9 174 100.0
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 1.9e-87 325.9 174 100.0
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 1.9e-87 325.9 174 100.0
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 1.5e-76 289.7 181 89.0
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 1.1e-74 283.5 181 87.3
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.1e-66 256.9 189 79.9
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 2.1e-65 252.7 181 80.7
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 6.1e-65 251.1 192 76.6
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 1.1e-63 246.9 189 75.1
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 3.2e-50 202.2 176 70.5
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 6.1e-49 198.0 180 63.9
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 8.8e-48 194.1 161 72.0
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 7.4e-47 191.0 191 61.3
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 2.3e-40 169.5 116 79.3
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 4.4e-39 165.2 176 59.7
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 3.1e-37 159.1 202 48.5
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 4.1e-37 158.7 177 57.6
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 7.0e-37 157.9 102 82.4
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 1.0e-35 154.1 174 58.0
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 2.2e-35 152.9 198 48.5
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 2.2e-35 152.9 174 52.9
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 3.8e-35 152.1 176 58.0
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 6.5e-35 151.4 187 51.9
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 1.9e-34 149.8 89 80.9
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 5.5e-34 148.3 148 58.1
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 9.4e-34 147.5 177 52.5
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 9.4e-34 147.5 180 52.8
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 1.2e-33 147.1 220 44.5
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 1.6e-33 146.7 186 49.5
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 3.6e-33 145.6 197 49.7
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 6.1e-33 144.8 185 50.8
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 6.1e-33 144.8 146 57.5
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 8.0e-33 144.4 182 50.5
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.0e-32 144.1 86 76.7
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 1.4e-32 143.7 198 46.0
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 1.4e-32 143.7 91 73.6
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 2.3e-32 142.9 102 69.6
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 3.0e-32 142.5 99 68.7
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 3.0e-32 142.5 174 54.0
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 3.0e-32 142.5 97 70.1
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 5.2e-32 141.7 177 51.4
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 6.8e-32 141.4 201 45.3
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 8.8e-32 141.0 205 48.8
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 8.8e-32 141.0 180 51.1
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 8.8e-32 141.0 88 78.4
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 1.5e-31 140.2 177 52.0
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 2.0e-31 139.8 180 52.2
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 3.4e-31 139.0 183 51.4
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 3.4e-31 139.0 102 68.6
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 4.4e-31 138.7 177 50.3
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 5.7e-31 138.3 188 47.9
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 5.7e-31 138.3 184 50.0
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 5.7e-31 138.3 184 50.0
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 5.7e-31 138.3 180 50.6
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 5.7e-31 138.3 180 51.7
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 9.8e-31 137.5 187 47.6
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 9.8e-31 137.5 187 47.6
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 1.3e-30 137.1 184 48.9
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 1.3e-30 137.1 185 48.6
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 1.3e-30 137.1 179 52.0
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 1.3e-30 137.1 163 52.1
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 1.7e-30 136.7 95 68.4
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 2.8e-30 136.0 99 66.7
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 2.8e-30 136.0 163 51.5
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 3.7e-30 135.6 188 47.9
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 6.3e-30 134.8 215 42.3
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 6.3e-30 134.8 178 48.3
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 8.3e-30 134.4 178 50.6
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 1.4e-29 133.7 221 41.6
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 2.4e-29 132.9 184 49.5
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 5.4e-29 131.7 203 45.3
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 5.4e-29 131.7 191 48.2
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 5.4e-29 131.7 191 48.2
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 7.0e-29 131.3 176 48.9
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 1.2e-28 130.6 196 46.9
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 1.2e-28 130.6 102 68.6
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 1.6e-28 130.2 186 48.4
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 2.0e-28 129.8 164 51.2
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 2.7e-28 129.4 180 48.3
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 2.7e-28 129.4 196 45.4
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 2.7e-28 129.4 173 47.4
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 4.5e-28 128.6 176 48.9
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 7.7e-28 127.9 181 46.4
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 2.3e-27 126.3 105 61.9
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 2.3e-27 126.3 188 46.3
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 2.3e-27 126.3 178 50.6
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 2.3e-27 126.3 191 43.5
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 2.9e-27 125.9 138 54.3
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 5.0e-27 125.2 195 47.7
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 6.5e-27 124.8 85 70.6
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 6.5e-27 124.8 176 45.5
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 8.6e-27 124.4 102 59.8
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 1.1e-26 124.0 175 42.9
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 1.1e-26 124.0 197 43.7
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 1.5e-26 123.6 107 60.7
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 1.9e-26 123.2 158 49.4
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 1.9e-26 123.2 83 72.3
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 2.5e-26 122.9 102 60.8
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 2.5e-26 122.9 170 48.8
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 3.3e-26 122.5 179 45.8
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 5.5e-26 121.7 108 57.4
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 7.2e-26 121.3 86 67.4
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 9.5e-26 120.9 202 43.1
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 9.5e-26 120.9 142 47.9
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 2.8e-25 119.4 190 46.3
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 6.1e-25 118.2 184 46.7
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 6.1e-25 118.2 100 59.0
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 1.4e-24 117.1 175 48.0
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 1.8e-24 116.7 224 42.4
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 6.8e-24 114.8 77 66.2
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 8.9e-24 114.4 67 85.1
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 7.5e-23 111.3 95 51.6
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 2.2e-22 109.8 89 59.6
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 1.1e-21 107.5 186 37.6
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.1e-21 107.5 176 46.0
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 1.6e-20 103.6 86 52.3
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 7.8e-20 101.3 174 37.9
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.0e-19 100.9 184 38.6
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.3e-19 100.5 148 39.2
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 5.0e-19 98.6 78 71.8
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 5.0e-19 98.6 144 43.1
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 1.5e-18 97.1 54 77.8
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 1.6e-17 93.6 82 59.8
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 2.8e-17 92.8 85 50.6
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 4.4e-15 85.5 207 31.4
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 2.9e-14 82.8 80 47.5
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 2.9e-14 82.8 155 38.1
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 6.4e-14 81.6 90 45.6
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 6.4e-14 81.6 202 38.6
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 7.0e-13 78.2 56 55.4
Haze_20337 Corylus avellana HOM05D005678 ORTHO05D006894 1.5e-07 60.5 34 76.5
CDE07G1371 Ceratophyllum demersum HOM05D005678 ORTHO05D006894 2.9e-06 56.2 131 35.9
Lsat_1_v5_gn_3_22700 Lactuca sativa HOM05D005678 ORTHO05D006894 4.9e-06 55.5 139 38.1
MCO10G373 Micromonas commoda HOM05D005678 ORTHO05D006894 4.9e-06 55.5 67 40.3
PRCOL_00006519 Prasinoderma coloniale HOM05D005678 ORTHO05D006894 6.4e-06 55.1 71 43.7
ATR0580G376 Amborella trichopoda HOM05D005678 ORTHO05D006894 8.3e-06 54.7 54 48.1


User provided reference genes

Program Settings