Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 9.4e-66 253.4 134 100.0
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 9.4e-66 253.4 134 100.0
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.4e-64 249.6 131 100.0
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 5.9e-52 207.6 143 82.5
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 8.5e-51 203.8 133 85.0
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 8.5e-51 203.8 133 85.0
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.9e-50 202.6 136 83.1
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 5.7e-47 191.0 134 80.6
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 7.5e-47 190.7 138 76.8
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 9.8e-47 190.3 138 76.8
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.7e-46 189.5 138 76.8
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.7e-46 189.5 138 76.8
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 8.3e-46 187.2 138 78.3
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 8.3e-46 187.2 138 78.3
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 5.4e-45 184.5 138 76.1
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 4.5e-44 181.4 136 75.0
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.1e-41 172.6 137 72.3
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 1.2e-39 166.8 142 66.9
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.8e-24 116.3 139 52.5
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 4.9e-22 108.2 139 48.2
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 2.1e-20 102.8 99 54.5
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 6.6e-19 97.8 139 46.8
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 3.3e-18 95.5 96 54.2
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 1.2e-17 93.6 133 46.6
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 8.1e-17 90.9 102 51.0
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 8.1e-17 90.9 139 44.6
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.3e-16 89.4 92 54.3
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 2.3e-16 89.4 92 54.3
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 3.1e-16 89.0 87 58.6
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 3.1e-16 89.0 135 43.0
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.1e-16 89.0 137 44.5
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 4.0e-16 88.6 134 46.3
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 4.0e-16 88.6 93 53.8
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 4.0e-16 88.6 97 49.5
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 6.8e-16 87.8 99 50.5
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 8.9e-16 87.4 95 53.7
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 8.9e-16 87.4 92 55.4
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 8.9e-16 87.4 141 44.7
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 8.9e-16 87.4 94 53.2
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.2e-15 87.0 132 42.4
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.5e-15 86.7 92 53.3
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 1.5e-15 86.7 107 49.5
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 1.5e-15 86.7 107 49.5
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.0e-15 86.3 125 46.4
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.6e-15 85.9 133 42.9
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 5.8e-15 84.7 109 44.0
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 1.7e-14 83.2 86 52.3
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.7e-14 83.2 129 45.7
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 2.2e-14 82.8 103 48.5
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.2e-14 82.8 87 54.0
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 2.9e-14 82.4 106 47.2
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 3.7e-14 82.0 97 52.6
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 3.7e-14 82.0 95 50.5
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 4.9e-14 81.6 95 50.5
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 8.4e-14 80.9 132 40.9
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 1.1e-13 80.5 128 40.6
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.1e-13 80.5 96 47.9
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 1.4e-13 80.1 97 44.3
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 7.1e-13 77.8 118 40.7
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 9.2e-13 77.4 139 41.7
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 1.2e-12 77.0 87 49.4
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.2e-12 77.0 129 41.1
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.2e-12 77.0 95 46.3
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.7e-12 75.9 129 43.4
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 3.5e-12 75.5 97 43.3
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 3.5e-12 75.5 106 42.5
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.6e-12 75.1 90 47.8
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 7.8e-12 74.3 124 42.7
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 7.8e-12 74.3 86 50.0
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.7e-11 73.2 119 42.9
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 3.0e-11 72.4 96 44.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 3.9e-11 72.0 89 50.6
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 5.1e-11 71.6 103 42.7
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 5.1e-11 71.6 123 39.8
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 5.1e-11 71.6 92 47.8
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 8.6e-11 70.9 119 42.0
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 1.5e-10 70.1 109 43.1
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 2.5e-10 69.3 98 44.9
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 3.3e-10 68.9 93 45.2
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-10 68.6 134 40.3
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 5.6e-10 68.2 98 43.9
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 1.6e-09 66.6 93 44.1
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 2.1e-09 66.2 95 41.1
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 2.8e-09 65.9 145 34.5
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 6.2e-09 64.7 93 44.1
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 1.1e-08 63.9 93 45.2
BcaB03g12705 Brassica carinata HOM05D007435 ORTHO05D009338 1.4e-08 63.5 43 74.4
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.4e-08 62.8 63 49.2
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 3.1e-08 62.4 98 38.8
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 6.8e-08 61.2 55 58.2
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 8.9e-08 60.8 115 38.3
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.2e-07 60.5 96 40.6
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.2e-07 60.5 58 50.0
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.8e-07 58.2 51 58.8
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 7.6e-07 57.8 103 35.0
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 9.9e-07 57.4 75 46.7
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 9.9e-07 57.4 105 38.1
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 1.3e-06 57.0 51 56.9
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.7e-06 56.6 92 39.1
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 3.8e-06 55.5 107 37.4


User provided reference genes

Program Settings