Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-157 558.9 278 100.0
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.4e-156 556.2 278 99.6
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 9.1e-156 553.5 278 99.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-154 550.1 278 98.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.9e-154 548.5 278 98.2
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.7e-152 542.0 278 96.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 6.1e-152 540.8 278 96.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.8e-149 531.2 273 94.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 5.4e-148 527.7 278 93.2
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.6e-147 526.2 278 91.7
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.0e-146 523.5 278 91.7
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.3e-146 522.3 278 91.0
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.9e-146 521.9 278 91.7
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.4e-134 481.9 272 85.3
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.2e-132 475.3 272 84.2
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 4.1e-132 474.9 272 84.2
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.4e-132 474.6 272 84.2
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 3.5e-131 471.9 277 82.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.5e-131 471.9 272 83.5
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.0e-131 471.1 272 83.8
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.0e-130 468.8 271 84.1
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 3.9e-130 468.4 271 84.1
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 5.0e-130 468.0 272 82.4
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 5.0e-130 468.0 277 81.6
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 6.6e-130 467.6 272 81.6
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 6.6e-130 467.6 271 84.1
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 6.6e-130 467.6 271 84.1
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 271 83.8
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.3e-129 465.3 272 82.4
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.3e-129 465.3 272 82.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.3e-129 464.9 272 81.6
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 7.3e-129 464.2 272 82.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 9.5e-129 463.8 274 81.4
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.2e-128 463.4 272 83.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.8e-128 462.2 274 81.4
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.1e-127 460.3 277 80.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.8e-127 459.5 275 79.6
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.1e-127 458.8 277 79.8
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 3.1e-127 458.8 277 79.8
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 3.1e-127 458.8 272 80.1
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 5.2e-127 458.0 272 82.0
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 5.2e-127 458.0 272 80.9
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.2e-126 456.8 277 78.3
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 80.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 81.2
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.5e-126 456.4 278 80.2
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.5e-126 456.4 272 81.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.0e-126 456.1 277 79.8
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 7.5e-126 454.1 278 79.1
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 7.5e-126 454.1 275 78.5
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 9.8e-126 453.8 277 79.1
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 9.8e-126 453.8 275 78.9
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.3e-125 453.4 272 80.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.3e-125 453.4 272 79.8
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.9e-125 452.2 277 78.0
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 4.9e-125 451.4 276 77.2
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 6.4e-125 451.1 275 79.3
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 8.3e-125 450.7 272 78.7
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 8.3e-125 450.7 272 79.8
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.1e-124 450.3 275 77.8
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.4e-124 449.9 276 78.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.9e-124 449.5 275 77.5
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.9e-124 449.5 271 80.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.4e-124 449.1 275 78.2
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 7.0e-124 447.6 271 80.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.2e-123 446.8 277 77.6
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.7e-123 445.7 272 78.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.7e-123 445.7 270 78.1
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 6.0e-123 444.5 277 77.6
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.7e-122 443.0 275 77.5
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 275 78.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 3.9e-122 441.8 275 76.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 5.1e-122 441.4 275 77.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 5.1e-122 441.4 271 77.9
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 7.3e-121 437.6 271 76.0
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.6e-120 436.4 271 76.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.1e-119 432.2 271 77.9
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.1e-119 432.2 271 77.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.8e-119 431.0 275 76.7
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.5e-118 429.9 271 75.6
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.5e-118 429.9 305 71.1
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.6e-118 429.1 258 80.2
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 9.9e-118 427.2 271 76.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.7e-117 426.4 271 75.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 3.7e-117 425.2 271 74.9
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 6.4e-117 424.5 303 70.3
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 8.3e-117 424.1 305 68.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.9e-116 422.9 263 76.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.1e-116 421.0 272 73.5
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.2e-115 420.2 272 75.4
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.6e-115 419.9 271 73.1
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.0e-114 417.2 277 74.7
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 3.3e-113 412.1 274 71.5
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-112 410.2 289 70.6
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.8e-112 409.1 262 72.9
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 6.2e-112 407.9 277 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.1e-111 405.6 272 70.2
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 5.2e-111 404.8 385 55.6
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.6e-110 402.5 271 74.5
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.2e-109 399.4 272 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 6.4e-109 397.9 272 69.5
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 8.4e-109 397.5 271 68.3
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 3.9e-106 388.7 242 77.3
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 5.1e-106 388.3 278 73.4
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 5.1e-106 388.3 242 76.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 3.3e-105 385.6 278 74.8
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-104 383.6 278 74.5
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.4e-103 379.4 246 73.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 4.4e-102 375.2 272 69.9
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 3.8e-101 372.1 228 78.1
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.9e-100 369.8 278 71.2
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 9.3e-100 367.5 272 66.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.7e-99 365.9 227 76.7
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.2e-96 354.8 252 71.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.2e-91 340.5 222 73.9
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 4.6e-91 338.6 278 65.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.8e-90 336.7 272 60.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 5.1e-90 335.1 198 80.3
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 7.4e-89 331.3 272 58.5
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.4e-87 326.2 292 58.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 8.7e-82 307.8 179 80.4
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 2.7e-75 286.2 281 50.5
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.3e-72 275.0 168 77.4
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.2e-70 270.8 241 58.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.6e-67 260.4 153 78.4
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 6.1e-67 258.5 154 80.5
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.0e-66 257.7 279 56.6
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 3.0e-66 256.1 160 81.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 2.4e-63 246.5 165 73.3
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.8e-58 230.3 207 58.5
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 5.2e-50 202.2 277 44.4
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.9e-45 186.4 261 49.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.8e-45 186.0 271 45.0
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.2e-44 182.6 128 69.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.1e-43 180.3 269 46.5
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 3.1e-39 166.4 261 45.2
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.2e-37 160.2 148 60.8
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.8e-37 159.5 185 53.0
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.7e-32 142.9 100 69.0
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.4e-26 124.4 67 80.6
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 3.0e-26 123.2 98 62.2
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 5.2e-26 122.5 136 47.1
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.4e-25 119.4 136 46.3
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 8.9e-18 95.1 62 71.0
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.6e-17 93.6 73 60.3
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.3e-13 80.5 45 86.7
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.3e-12 76.6 92 45.7
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 8.9e-10 68.6 48 68.8
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 4.1e-07 59.7 42 71.4


User provided reference genes

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