Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 0.0e+00 1200.7 622 100.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 0.0e+00 1188.7 621 99.2
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 0.0e+00 1188.7 621 99.2
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 0.0e+00 1153.3 621 96.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 0.0e+00 1146.0 626 95.5
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 0.0e+00 1083.6 621 90.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 4.3e-307 1057.4 643 86.8
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 4.8e-306 1053.9 623 88.6
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.0e-284 981.5 625 83.0
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.9e-278 962.2 626 81.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 2.5e-278 961.8 623 80.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.4e-276 956.1 622 81.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.6e-269 932.6 623 79.8
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 4.0e-260 901.4 626 75.7
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-250 869.8 618 77.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 3.9e-223 778.5 625 65.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.5e-222 776.5 628 65.8
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.3e-221 773.5 633 65.6
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.6e-216 755.0 626 64.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 4.6e-216 755.0 630 63.5
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.7e-213 745.3 623 63.6
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 6.2e-213 744.6 627 62.0
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.8e-212 743.0 626 62.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.5e-209 732.6 625 62.2
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.1e-208 729.6 626 60.9
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 6.0e-208 728.0 627 60.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.8e-207 726.5 632 60.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.7e-205 718.8 623 60.5
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.5e-203 713.4 627 60.3
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-201 707.2 622 58.7
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.1e-201 707.2 624 59.8
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.1e-201 707.2 629 60.3
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 3.2e-201 705.7 620 58.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.5e-201 704.9 620 58.5
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 9.3e-201 704.1 633 59.4
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.6e-200 703.4 624 59.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.0e-199 700.7 620 58.1
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 5.1e-199 698.4 633 59.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 8.7e-199 697.6 619 59.0
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.3e-198 695.7 627 57.7
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.8e-197 692.6 661 57.9
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 4.8e-197 691.8 542 67.0
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 4.8e-197 691.8 615 58.9
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.0e-195 686.4 621 57.6
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 4.2e-193 678.7 624 58.3
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.6e-192 676.8 623 57.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.0e-191 674.1 624 57.7
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.3e-191 672.9 630 58.1
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 6.7e-191 671.4 630 58.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.1e-190 670.6 622 57.4
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.6e-190 669.5 611 57.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.6e-190 669.5 627 57.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 5.7e-190 668.3 630 57.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 9.7e-190 667.5 622 56.6
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.7e-189 666.8 627 55.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.4e-188 662.9 611 57.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.1e-188 662.5 625 58.1
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 4.1e-188 662.1 622 57.4
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.1e-188 661.0 591 60.7
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 3.4e-187 659.1 665 54.3
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.3e-186 657.1 656 55.2
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.7e-186 656.8 622 56.3
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 6.5e-186 654.8 629 56.0
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.2e-185 652.5 633 55.6
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 3.6e-184 649.0 560 61.4
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 6.1e-184 648.3 561 60.4
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.1e-180 635.6 526 63.3
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 9.1e-180 634.4 526 63.1
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.7e-178 630.2 563 58.1
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.2e-178 629.8 588 56.1
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 8.5e-178 627.9 627 53.3
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 8.5e-178 627.9 634 53.9
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.0e-175 620.9 627 53.4
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 3.0e-175 619.4 623 54.4
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 5.2e-175 618.6 627 53.3
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.5e-174 617.1 588 55.6
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 9.7e-174 614.4 627 55.7
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.5e-171 605.9 620 53.7
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 3.5e-171 605.9 617 52.4
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.0e-170 604.4 618 54.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.2e-169 599.0 559 56.9
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.2e-168 597.4 659 49.6
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.0e-167 594.3 525 59.6
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.3e-165 587.4 517 60.3
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.2e-163 580.9 622 51.9
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.3e-159 566.6 447 67.1
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 4.4e-158 562.4 509 58.0
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 3.7e-157 559.3 544 56.6
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 7.0e-156 555.1 462 63.9
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.0e-154 551.2 547 55.8
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.1e-153 547.7 623 47.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.6e-150 536.6 467 61.5
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 7.5e-150 535.0 622 46.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 7.0e-148 528.5 605 52.7
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.4e-140 503.4 658 45.6
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.6e-137 492.3 513 61.2
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.6e-137 492.3 513 61.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 3.4e-134 483.0 625 46.2
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.3e-122 444.5 577 45.8
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.7e-122 444.1 389 58.9
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.7e-120 436.0 376 67.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 9.3e-116 421.8 358 62.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 6.9e-111 405.6 472 48.9
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.1e-91 340.9 387 51.4
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 3.5e-91 340.1 349 57.3
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.3e-90 337.4 641 34.5
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 3.0e-90 337.0 349 57.0
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.6e-83 313.5 629 32.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 4.6e-83 313.2 625 36.5
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.3e-79 299.7 618 31.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-70 270.4 229 68.6
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.5e-70 270.4 164 89.6
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.5e-65 255.0 509 33.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.4e-65 252.7 369 44.2
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 6.5e-61 239.6 165 76.4
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.6e-59 235.0 271 46.9
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-56 224.9 225 62.7
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.8e-42 178.3 179 50.8
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 4.4e-41 173.7 399 31.6
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.8e-34 151.8 260 39.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.3e-34 151.4 142 54.9
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 6.4e-32 143.3 165 45.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 4.1e-31 140.6 149 51.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.4e-31 140.2 130 62.3
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.9e-28 131.7 142 48.6
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-27 128.6 406 31.0
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.4e-26 125.6 131 60.3
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.6e-25 121.3 373 32.2
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.0e-22 110.2 323 30.7
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.3e-20 104.4 85 61.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.3e-20 104.0 66 77.3
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 4.7e-19 100.5 405 27.9
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 6.2e-19 100.1 77 67.5
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 8.9e-18 96.3 115 46.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.7e-16 92.0 63 68.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.4e-16 90.1 149 34.2
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 1.1e-12 79.3 87 50.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.4e-10 72.4 41 82.9
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 2.4e-10 71.6 87 49.4
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 8.9e-10 69.7 87 49.4
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-09 68.9 66 51.5
A06p20760 Brassica napus HOM05D067795 ORTHO05D039273 5.8e-09 67.0 73 52.1
BcaC01g01884 Brassica carinata HOM05D067795 ORTHO05D039273 2.9e-08 64.7 73 50.7
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 4.9e-08 63.9 113 31.9
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.4e-07 62.4 70 47.1
AL4G30280 Arabidopsis lyrata HOM05D014236 ORTHO05D015933 2.4e-07 61.6 98 40.8
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.7e-06 58.2 50 62.0
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 6.0e-06 57.0 40 62.5
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 7.8e-06 56.6 43 58.1


User provided reference genes

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